KEGG   Xenopus tropicalis (tropical clawed frog): 100125120
Entry
100125120         CDS       T01011                                 
Symbol
prpf39.1
Name
(RefSeq) pre-mRNA-processing factor 39
  KO
K13217  pre-mRNA-processing factor 39
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    100125120 (prpf39.1)
Spliceosome [BR:xtr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    100125120 (prpf39.1)
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C Suf HAT_Syf1_CNRKL1_N TPR_14 HAT_Syf1_CNRKL1_C Mad3_BUB1_I
Other DBs
NCBI-GeneID: 100125120
NCBI-ProteinID: NP_001116273
Xenbase: XB-GENE-994634
UniProt: Q08BT3
LinkDB
Position
8:complement(92557888..92575970)
AA seq 361 aa
MEQSPEHCATESPPPATEPPLPKTESPLPKTDTPAPPLPPDFEKYWKSVQAYPEEFNTWT
YLLQYVEQENHLSAVRKAFDAFLAHYPYCYGYWKKYADLEKKNNNILEADEVYRRGIQAI
TLSVDLWMHYLNFLKETLDPADPETCLTLRGTFEHAVVSAGLDFKSDKLWEMYINWETEQ
GNLSGVTSIYSRLLGIPTQYYSLHFQRFKEHIQGNLPREFLTSEKFIELRKELASMTLHG
GTNDDIPPGMEEIKDPAKRTTEVENMRHRIIEVHQEIFNLNEHEVSKRWNFEEGIKRPYF
HVKPLEKAQLNNWKEYLDFELENGSNERVVILFERCVIACACYEEFWIKVQHHIPNILIH
I
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggagcagtctcctgaacactgtgcaacagaatcacctcccccagcaacagaacctcct
ttgccaaaaacagaatcacctttgccaaaaacagatacacctgctccacctcttcctcct
gattttgaaaagtattggaaatctgtacaagcttatcctgaagaatttaatacttggaca
tacttgttacaatatgtagaacaagagaatcatctgtctgctgttaggaaagcatttgac
gcctttcttgcacattatccttattgttatggctactggaagaaatatgcagacttggaa
aaaaagaacaataacatattagaagcagatgaggtttatagaaggggcattcaagctatt
acattaagtgttgatctttggatgcattatcttaatttcttgaaagaaactttagatcct
gcagatccagagacatgtcttacattaagaggaacctttgaacatgcagttgtttcagca
gggctagacttcaaatctgacaagctttgggaaatgtatattaattgggaaactgaacag
ggaaacttaagtggtgtcacatcaatttacagccggcttcttgggattcctacgcagtac
tacagtcttcattttcagcggtttaaagaacatattcagggtaatttgcctagagaattt
ctaacatctgaaaaatttatcgagcttcgaaaggagcttgcatctatgactctgcatggt
ggaacaaatgatgatattcctcctgggatggaagagataaaagaccctgcaaagcgtact
acagaagttgaaaacatgcggcatcgtataattgaagttcatcaggagatttttaatcta
aatgaacatgaagtcagcaagaggtggaactttgaagaaggaattaaaagaccttacttt
catgttaagcctctggagaaagcacagcttaataactggaaagaatatttggactttgag
ctagagaatgggtcaaatgaacgcgttgttattcttttcgaaagatgtgtcattgcttgt
gcctgctatgaggagttttggatcaaggtacagcatcatattcctaacatattaattcat
atatga

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