Xenopus tropicalis (tropical clawed frog): 100127179
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Entry
100127179 CDS
T01011
Symbol
dhx16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100127179 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100127179 (dhx16)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100127179 (dhx16)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100127179 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
100127179 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
100127179
NCBI-ProteinID:
NP_001116881
Xenbase:
XB-GENE-480525
UniProt:
F7CRX8
LinkDB
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Position
8:complement(75476124..75499159)
Genome browser
AA seq
1033 aa
AA seq
DB search
MEGVELWVKNQLHDVLGMSDRHVAQFLVGTALRSTSATDLLVRLRDTGAIDVTEKVKGFL
EQLWLKIPRKAPIERPARAAEREALAMQEKNRSYALLEDSEEEEKTDHKEEKRKKKHLRK
RRKEESSDSENENAQTTKVPSPQKTSEDEDEKEELARLKDLEERDAFAERVKKRDKEKTR
NIVERSDKKAYEEAQKRLKLAEEDRKKMIPELRKKSRREYLNKREKEKLEDLEAEIADEE
YLFVEPELTSVEQKELEYKRRVRDLAKEYKKAGDKERMEKHDRYFMPEENRSKKIPDRYE
EPMSEERFAPREEQRRWEEEHIGAASLRFGAKDAHDHGKKEYDFVMEENEVIQFVSSAQM
KGTIDKEEENSEVLSESERKKLSIQEVRRSLPVFPYRSDLLQAISDHQILIIEGETGSGK
TTQIPQYLHEHGYTKNGLKIGCTQPRRVAAMSVSARVSQEMGVKLGNEVGYSIRFEDCTS
ERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDVLFGLIKDIARFRQDLKV
LVASATLNTERFSSFFDDAPVFRIPGRRYPVDIYYTKAPEADYLEACVVSVLQIHVTQPP
GDILVFLTGQEEIETCCEMLQERCRRLGSKIAEMLVLPIYANLPSDMQAKIFEPTPPGAR
KVVIATNIAETSLTIDGIIYVIDPGFCKQKSYNARSGMESLIVTPCSKASANQRAGRAGR
VAAGKCFRLYTAWAYKNEMEDTTVPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPHET
LVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKIILASEQYGCSEQILTIAAMLS
VNNTIFYRPKDKLVHADTARANFTVPGGDHMVLLNVYTQWVESGHSLQWCYENFIQARSL
RRARDVREQLEGLMGRIEIELTSCEGDSIPVRKAITAGYFYHTARLTRSGYKTVKQQQAV
YIHPNSSLHEEQPRWVIYHELVFTTKEYMRQIIEIDSTWLLEVAPHYYKSRELEDPTSKK
MPRKAGKSREELG
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagtggagttgtgggtgaagaatcagctccatgatgttctgggcatgagcgac
cggcatgtggctcagttccttgttggtactgctctgagaagtacgagtgctactgatctg
ctagtccgtctaagggacactggggccattgatgttactgaaaaagtgaaggggttcctg
gagcaactctggctaaagatccctagaaaggccccaattgaacggccagcccgggctgct
gaacgagaagcgctggctatgcaggagaagaatagatcatatgctttgctagaggatagt
gaagaagaggagaagactgatcacaaagaagagaaaaggaaaaagaaacacttaaggaaa
agaagaaaagaggagtcatctgatagtgaaaatgaaaatgcacagaccactaaggtacct
tcccctcaaaagacctcagaagatgaagatgagaaagaggagctggctcgattgaaagat
ctggaggagagagatgcttttgcagaaagagtaaagaagcgagataaagaaaaaacaaga
aatattgtggagagatcagataagaaggcgtatgaagaagcccaaaagaggctgaaatta
gcagaagaagatcgcaaaaaaatgattcctgagctaaggaagaagtcccgtcgggaatat
ctaaataaaagagaaaaagagaagctggaggatctagaggcagagatcgcagatgaggag
tatctttttgtggaacctgagttgacttcagtagagcagaaggagcttgaatataagcga
agggtgcgtgaccttgcaaaggaatacaagaaagctggggacaaagagaggatggaaaag
catgaccgctattttatgccagaagaaaacaggagtaagaaaattcctgatcgctatgag
gaacctatgtctgaggaaagatttgcccctcgtgaagagcaaaggcggtgggaggaggag
catattggggcagcctctctgagatttggagcaaaggatgcacatgatcatgggaagaag
gagtatgattttgtcatggaagaaaatgaggtcatacagtttgtcagctcggcacagatg
aagggaacaatagataaggaagaggagaattctgaagtcttgtcagaatcagaacgaaag
aaactgtctatacaagaggttcggcgaagcctccctgtcttcccatatcgttctgatctt
cttcaagcaatctctgatcatcagattcttataattgaaggagagactggatctggcaaa
actacccaaataccacagtacctgcacgaacatggttatactaaaaatggcctgaagatt
ggctgcactcagcctcgaagagtggctgccatgagtgtatcagcacgagtttctcaagag
atgggtgttaaattaggcaacgaggtgggatatagtattcggtttgaagactgcacatct
gagcgcacagtgctgaagtatatgacagatgggatgttactgcgggaatttctcactgag
cctgatctggcatcttacagtgtaataataatagatgaagctcatgaaaggactttgcac
acagatgttctttttggcctcattaaagacattgcccgtttccgccaagacctcaaagtt
ctggtagccagtgccaccctaaacacagagcgattttcctccttttttgatgatgcccca
gtgtttcgtattcctgggcgccggtatccagtggatatatattacaccaaggctcctgaa
gcagattacttggaggcctgtgtggtgtcagtgttgcagattcatgttacccagccacca
ggagacatcttagtctttcttacaggacaggaggagatagaaacatgctgtgagatgcta
caagagcgatgtcgtcgactaggatccaagattgcagagatgctggtgttaccaatatat
gctaatttgccttctgacatgcaggcaaagatctttgaacctacacctccaggagcaaga
aaagttgtgatagccactaacattgctgaaacatcacttacaattgatggaattatatat
gttattgacccaggtttctgcaagcagaaaagttacaatgctcgatcaggaatggagtcc
ctcattgtgactccctgctcaaaggcatcagccaatcaaagggctgggagagctggacgt
gtggctgcaggaaaatgttttcgactttatacagcttgggcatataagaatgagatggaa
gatacaacagtgcctgagatccagagaaccaatctgggaaatgtagttctcttacttaaa
agtttaggcataaatgacctcatccactttgacttcatggatccaccaccccatgagact
ctggttttagctcttgagcagctttatgcacttggtgccctgaaccatcttggagaactg
acaaaattgggaaggaggatggctgagcttcctgtggaccctatgttatccaagattatt
ttagcctctgagcagtatggttgctctgaacagatccttaccattgctgccatgttatct
gtaaacaataccatcttttatcgacccaaagacaaactggttcatgcagatacagcacgg
gctaactttactgtacctgggggagaccacatggtgctgcttaacgtatatacacagtgg
gtagagagtggtcactccctccagtggtgctatgagaactttatccaggctcgctctctc
cgtcgagcacgagatgtacgggagcaacttgagggcctaatgggacgtattgagattgag
ctgacatcctgtgagggggacagcatacctgtgcgcaaggcaatcacagctggatatttc
taccacacggcacgtcttactcgtagtggatacaagactgtcaaacagcagcaggctgta
tatatccatccaaatagcagtcttcatgaggagcaaccccgctgggttatatatcatgag
ctggttttcaccaccaaggaatatatgagacagattatagagattgatagcacatggctc
ttagaggtagctccacattactacaagtcccgagagctggaagacccaactagcaagaag
atgccaagaaaagctggcaaaagcagggaagaactaggctga
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