Xenopus tropicalis (tropical clawed frog): 100127640
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Entry
100127640 CDS
T01011
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100127640 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
100127640 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100127640 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
xtr03029
]
100127640 (rb1cc1)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100127640 (rb1cc1)
Membrane trafficking [BR:
xtr04131
]
Autophagy
Autophagosome formation proteins
ULK complex
100127640 (rb1cc1)
Mitochondrial biogenesis [BR:
xtr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
100127640 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
100127640
NCBI-ProteinID:
XP_002934149
Xenbase:
XB-GENE-984583
UniProt:
F6U700
LinkDB
All DBs
Position
6:complement(114360983..114434359)
Genome browser
AA seq
1576 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELAVQTVTDLKHAIQTKYKIAVHHQILVVNGGECMASDRRVC
SYSAGTDTNPIFLFNKEMILCERPPVIPRTTFSAENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCTHSYQKLLFKFENAYTKYIQ
SIDDIKVKLTNLGTAVSVMAKIPLLECLTRHSYRMCLDRLTSTEVYTEEMENAKVDNVVQ
YDEEAKLKNVALLASLSMSVEEQLKEVTGKDTGQENNKSSTQNMELSEPNDSENLPSFNV
SLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIQPFLAECRQTVAKLDNQNMKAIKGLE
DRLYALDQMIASCSRLVNEQKELAQGFLANQKRAENLKDPSVLPDLCLSHANQLMIMLTN
HRKLLDIKQKCTTAKQELANNLQVRLKWCCFVMLHADQDGEKLQALFRLLTELVERIKIV
EALSTVPQMYCLAVVEVVRRKMFIKHYREWTNSLVKDGKSLYETEKIKRESFGKLFRKSY
LRNRLFRGLDSWPPSFCTRKPRRFDSELPDISVNDLRFLQCICPPEVQLFLRVPLLCDFE
PLHQHVRALHNLVKAAQSLDEMSQTITDLLNEQKASNSQLSPQCITTQRIDSATEATTTT
SSKTPLSLSLQGPICPAVNAPGPLEELSPDSIDAHTFDFETIPHPGTEQSLKQGSLDMDS
LADSPESDFMSAVNEFVIEENPISPNISDTQSPEMMVESLYSSVINAIDNRRMQDTKSKV
KDENISSRVCLEKCKILAHESQTSLRNFKEDLSYLKILVQREQKNFASAIKSVSANIYDT
VDKVKLSIETALKEKHLEELQVLEQSYQKRLQLSKEQFDENEKQLKSDLAKLKEHLKNRD
NEFALIRNENETFLCLQSEHNEKIISLENTMKEQACEIQQLRQYREAALEDIRKLHAENE
EKLRLLKEDLMILEQTHLKELEDNLKLRHAQEMESLTSDHNHSQERVKQDHKRMVDQLVE
SYNTTIHEKDSRLQEKDLRVSELSDNRCKLEVELALKEAEIDEIKLLLEECKAQQQEVMK
CQINKKTETLEKEILRLNSLIRVQDDKQEQGLVELEALLSAEKNLCISELLNRHETETSL
FQEEISSLTRAHKQALETECGLCQQVNELRSRLDENVKALEKQTELQEKTLNEQKMKYET
AIQKLEEEQEQILLAQKQEKELLLQTFAHEKEEAVKKFKAIEQELLEKVCQVEQQVNQSS
TEFAVPENAPSLVYKLQEQLQKEKQSFTEQLEHQERKRNEEMQSLKISLIAEQQTNFNTV
LTRERVKKENIISEINEKLKMVTQQQDRDKDLIETLSEDRARLLEEKKKLEEEVARLHSS
NVAMLAQVTVASEPSGASAPDFPSEIDRPNFDATVFEEEKLEPSIETSMMAVHDLTLSEE
KQKIMQLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERH
DNYVLFTVSPTLYFLHSESLSSLDLKPASGSSRRPWVLGKVMEKEYCQAKKAQNRFKVPL
GTKFYRVKAVPWNKKV
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgttttcctggtgaacactggaacaaccctgacttttgacaccgagcta
gcagtgcagactgtgactgatcttaagcatgctatccaaacaaagtacaaaattgcagtc
catcatcagatacttgttgtcaatggaggggaatgtatggcatctgatagaagggtctgt
agctacagcgctggtactgacacaaatccaatttttctattcaataaggaaatgatactc
tgtgaacgtccgccagtgattcccaggacaacattttcagcagagaatgaaatggagtta
aaagttgaagagtcacttatgatgcctgcagtatttcacacagtcgcctctaggacacag
cttgcagtggaaatgtatgaagtcgccaagaagctatgctctttttgtgaaggtctggtc
catgatgaacatcttcagcatcaaggatgggcagccattatggcaaatttagaagactgt
acgcattcataccaaaagctgctttttaaatttgaaaatgcatatacaaagtatatacag
tctatagatgacattaaggtgaaattaacaaatttaggaacagctgtttctgtcatggcc
aagatcccgctgcttgagtgcctaacaagacatagctataggatgtgtttagatagacta
acatctactgaggtttatactgaagaaatggagaatgcaaaagtagacaatgtggtgcaa
tatgatgaagaagcaaaactgaaaaatgtggcattgctagcctcactttccatgtctgtg
gaagagcagctaaaggaagtaacaggaaaggacactgggcaagagaacaacaaatcttct
acacaaaacatggaactttcagaaccaaatgactctgaaaatctcccttcctttaacgtt
tcattattggactggataaatgtacaagatcggccaaatgatgttgagtcgttggttaga
aaatgttttgattcaatgagcagacttgatccacgaattattcagccatttctggcagaa
tgtcgtcaaactgttgccaaattggataatcaaaatatgaaagccatcaaggggcttgaa
gatagactgtatgctcttgatcaaatgattgctagctgcagcagactggttaatgaacaa
aaagaacttgctcagggatttttagcgaatcaaaagcgtgctgaaaacttgaaggacccc
tctgtgttacctgatttgtgcttaagtcatgcaaatcaattgatgatcatgctgacaaat
cacagaaaactgttggatatcaaacagaaatgtactactgccaaacaggagcttgctaat
aatttgcaagttcgtttaaagtggtgctgttttgtaatgctccatgctgaccaagatggt
gaaaaactacaggctctattccgactcttaacagagcttgtagaacgaatcaagattgtg
gaggctcttagtactgttcctcaaatgtactgcttagcagtagttgaagtggtgagaagg
aaaatgttcataaaacactacagagagtggacaaattcattagtaaaagatggaaaatct
ctttatgaaacagagaagattaaaagggaatcttttggaaagctttttaggaaatcttat
ttacgaaataggctctttagaggacttgactcttggccaccatcattctgtactcgtaag
ccaaggagatttgacagtgaacttcctgatatctctgtaaatgaccttcggtttttgcag
tgtatttgccctccagaagtccagcttttcctcagggttcccttgctttgtgattttgag
cctctacaccagcatgtgcgtgctctacacaatttagtgaaagcagcacaaagtttggat
gagatgtctcagaccatcactgatctgttaaatgaacaaaaggcatctaatagtcagctg
tccccacaatgtataactacgcaaaggatagacagtgcaacagaagctacaactactacc
tcatccaaaactcctttatcactcagtcttcagggacccatttgtcctgctgttaatgct
cccgggcctttggaagagctgtctccagacagcattgatgctcatacgtttgattttgaa
acgattccacatcctggcactgaacaatcacttaaacagggttctttggacatggactct
ttggcagatagtcctgaatctgattttatgtctgcagtcaatgagtttgttattgaagaa
aatcctatttcaccaaatataagtgatacacaaagtccagaaatgatggtcgagtcccta
tattcatctgttattaatgcaattgacaatagaagaatgcaagatacaaaaagcaaagta
aaggatgaaaacatatcttccagagtttgtctggaaaaatgtaaaattcttgcacatgaa
tctcaaaccagtttgcgtaattttaaggaggatctttcttacttaaaaatacttgtgcaa
agagagcaaaagaactttgccagtgctataaaatcagtttctgcaaatatttatgataca
gttgataaagtgaaactgtctattgaaacagcattaaaggaaaaacatttagaagaactt
caggtattagaacaatcttatcagaaaagactgcagctttcaaaggaacaatttgatgaa
aatgagaaacaactgaaaagtgaccttgcaaaactaaaagaacatttgaaaaatagagat
aatgaatttgcattgatcaggaatgaaaatgaaacttttctatgtttacagagtgagcat
aatgagaaaatcataagtctagaaaatacaatgaaggagcaagcatgtgaaattcagcaa
ctaagacaatatcgggaagccgctctagaggatattagaaaacttcatgctgaaaatgaa
gaaaagctcaggcttcttaaggaagatcttatgatattagagcaaacgcatttaaaagag
cttgaagataatttaaaactcaggcatgcacaagagatggaaagtttgacatctgaccat
aaccattctcaagaaagggtcaaacaagatcataaacgtatggttgaccagttggtagaa
tcttataatacaacaattcatgaaaaagacagtaggctacaagaaaaagaccttagagtt
tctgaactttctgacaatagatgtaaattagaagttgaactggcattaaaagaagcagaa
atcgatgaaataaaattattactagaagaatgcaaagcacaacagcaggaagtcatgaaa
tgtcaaattaataagaaaaccgaaactttggaaaaggagatattgaggttgaatagcttg
attcgggtgcaggatgataaacaagaacagggactagtggaacttgaagcattgttgtca
gctgaaaaaaatctgtgcatttcagaacttttaaatagacatgaaactgagaccagtcta
tttcaggaagaaatcagtagtctgacacgtgcacataagcaagcattagaaacagagtgt
ggactatgtcagcaagttaatgaattaagaagtagattagatgaaaatgtaaaagcgctt
gagaaacaaacagaactccaagaaaagactttaaatgagcagaaaatgaaatatgagact
gctattcagaagcttgaagaagagcaagaacaaattttgcttgcacaaaaacaagaaaag
gagttgctccttcaaacatttgcacatgagaaagaggaagctgttaaaaagtttaaggct
attgaacaagaactattagaaaaagtatgtcaagttgaacagcaagtaaaccagagctct
actgaatttgcagtgccagaaaatgcccctagcttggtctataagcttcaagaacagctt
caaaaagagaagcagtccttcacagagcagcttgaacaccaggaaaggaaaaggaatgag
gagatgcaaagtcttaagatttcactgattgcagaacaacagacaaactttaacacagtt
ttgacaagagaaagagtgaagaaagaaaacattattagtgagatcaatgagaaattaaag
atggttacacaacagcaggacagagataaagatttaattgaaacactgtctgaagaccga
gctcgtttgcttgaagaaaagaaaaaacttgaggaagaagttgccaggctacacagttct
aatgttgccatgttagctcaggtgactgtggcctctgaacctagtggagcctctgcacct
gactttccctctgaaatcgatagaccaaactttgatgccacagtctttgaggaagagaaa
ttggaacctagtattgaaaccagcatgatggctgttcatgatcttacattgtcagaagaa
aagcagaagataatgcagcttgaaagaactttgcagctaaaagaagaagaaaataaacgt
ttgaatcaaagattgatgtctcaaagcatgtcttcagtatcttcaagacattcagaaaaa
attgctattcgagacttccaggttggagacttagtacttattatcttggatgagcgtcat
gataattatgtgttgtttactgtcagcccaactttgtacttcttgcattcggaatctctt
tcttcactagatcttaaaccagcttctggctcatcaagaagaccctgggttttgggaaaa
gtaatggaaaaggagtattgtcaggcaaaaaaggcgcaaaacagatttaaagtacccctg
ggtactaagttttaccgggtcaaagcagtgccatggaacaagaaagtataa
DBGET
integrated database retrieval system
