Xenopus tropicalis (tropical clawed frog): 100134999
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Entry
100134999 CDS
T01011
Symbol
ranbp2
Name
(RefSeq) ranBP2-like and GRIP domain-containing protein 4
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100134999 (ranbp2)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100134999 (ranbp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100134999 (ranbp2)
03110 Chaperones and folding catalysts [BR:
xtr03110
]
100134999 (ranbp2)
04121 Ubiquitin system [BR:
xtr04121
]
100134999 (ranbp2)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100134999 (ranbp2)
Chaperones and folding catalysts [BR:
xtr03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
100134999 (ranbp2)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
100134999 (ranbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
IR1-M
Zn_ribbon_RanBP
VID27_PH
TPR_1
TPR_16
TPR_2
TPR_14
TPR_9
ARM_TT21_C
ANC1_spectrin
TPR_7
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
100134999
NCBI-ProteinID:
XP_002937704
Xenbase:
XB-GENE-492821
UniProt:
A0A6I8RLR9
LinkDB
All DBs
Position
2:complement(109272222..109315525)
Genome browser
AA seq
2842 aa
AA seq
DB search
MRRSKAELQRYIENAQNSATSPREKSMKGFLFARLYYEAKEYELAKRCVSSYISVQERDP
KAHRFLGQLFEIEGNVEKAVGCYKRSLELNPTQKDLVLRIAELICTLNIKDGRAEYWVDR
ASKLFPGSPEIYRLKEQLLSSQGEAGWNQLFDLIQAELFARPNDVYVNIKLVDLFLSNQR
LEEAVWHCLKPERRALRTDLEWCSRVVQVFKEYLASKQGQKNTNVKTITKELLLAHSDVV
LLTLSKKDVWKSKEALERFDQALLSVKQSVSGTDATDLSVTFYEMRGHYYMHAGTLLLKM
AQNSEVQWKALIEPAALCYLLAYQVPKPKSKPVKGEDNGQGFLEGLAFDRQSKSGHLLLT
LSHGKENFISEVIETFANQCGQSILLKFLFEDNLSMQDSFMGSDDISYAENRVPDLNELS
QLDSGSLRIHNGDLQHLTWLGLQWHFLANLPPFRKWLKQVFPRVPQETSRLESNIPESIC
LLDLEVFLLAVVHTSHLQLQDNNTTADPNRPRCLPLPICKQLFTDRQRSWWDAVYNLITK
KSLPGTSAKLRPVIQHDLTTLRAQEKHGLQPAVLVHWARSLHKTGYSLNSFYDQKEYMGR
CVHYWKKLLPLLDLVKQKKSIPEPVDPLFKHFHSKDIKLSEVKDLEDDACLAFATLDLVD
GKTEDAIIAFDAVKNVVAYWNLALIYQRKAEEIENDCLPAEEQEEFQECLLKCKGYLKMI
CDEYNADPSIATLLPVPVETVIEMLESVKQNLGEAMEDRSLGFVENHSAIKHSTPSPSKL
SISPSKPTRFSPKTPPRWAEDQKSLLEVLCNKVEALKKEVQELKHNNSNANASPHRWPNE
GFEPDSVADGYQGTQSFYTVPLTVSTSGPAAYYAQSPAYNSQHLLRPAANITPTKTSVYA
MNRLPPQQHMYAYPQPMHTPPTQQSSAACVFPQEIYGPPLRFESPATAILSPHNEEFYNY
SVPPASTNPPLPEPGYFTKPSTAMQHSKQEVPKVSDLGKGCLGQSTSEGQKPSPFTGPMQ
STPAPSTFKFNSNFKSNDGDFTFSSSQAGAQPSSAYTGSESLLGLLTSDRPTLEQEKKSS
SFEKIANDEKSMFRFGEKSFSSGFSITGTQSQDKNPLVFGQTENIFTFKSSAKSTFAPPT
FGVQPKDAHNLSVESDAGSEHAAADDDGPHFEPIVPLPEKIEVRTGEEDEEEMFCNRAKL
FRFDAETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKLKPNATSD
KSYVWNAYDYADEMPKPEQLAIRFKTVDEAVLFKTKFEEAQRLLALTESPVAPVQEKNAK
YKQKVDSSKPNETPLTFGSQFALKRGEWQCDCCLAKNAPTSTSCVCCQTPNKNQSSLTSS
TCISAPSFTFGKESATNKLGFGQQLLKNKEQWTCSKCLQKNDALVSLCSYCQTQNQAKTG
ISQPNKASTGFTNNVSAQGDSLAAVFGKKPGQWDCDACYVRNEPSANKCVSCQNTKPLSK
AVAQAASFSFAPGADNSQKNFGAQFAKKEGQWDCNSCLVRNEASASNCVACQSANPQATN
KDAVPPAQTPSGFKFGPYAEFGKTQPSLSAMFSRKEGQWECSTCLVINDASKENCAACQT
AKPGSSASQSKEVPFTFGIKANSSQNFGQPVAGFNCDFSGKGFKFGISDEKSSASNFAFQ
APVSNDESKVVKEGFNFPLSAGPLTFNFGISDSNKTKEMSAGFMKGTSTNDKESETAKTT
TKSEKSQQCSDKVLGQSVQSFSFADIAKTSDTEGFNFGKVDPNFKGFSGAGQKLFISQNA
KSNEAVASNEQEATDDLYKTEERDDIHFEPIVQLPDKVDLVTGEEDEKTLYSQRVKLYRF
DATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWITTTMNLKPLTGSDRSW
MWMANDFSDGDARLEQLAAKFKTPEQAEDFKTKFDECQRLLLDIPLQTPHKLVDTGRTAH
LIQKAEEMKTGLKDLKTFLTDKAKPLDESNVTGSTEVVKQSPADGTEPTFEWDTYDMRGE
ALEGNLDDSIYASPLASSPEKKNLFRFGESASGFNFSFQPEPSPSKSPTKLNHSRVSVGT
DEESDVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDKDSNQWKERG
IGDLKILQRLDNKSARVVMRRDQVLKLCANHRITTDINLQPMKGAERAWVWTAHDFAEGE
GKTECFAVRFKLQEAADLFKEGFEEAKEAQAKNCLLTPFSSRGTSPRAASCGKAAIAILE
ETTKERTDQQPEEDTSLTEAGTSSPTDQPAKALVSPAKFTFGSDAVKNIFGSEKKMPFAF
GNTSSTRSLFGFSFNASQEEVQKQPPEITLDFTSTIEAPEMSALQKSCQGSEQSPIVSSS
LTSSSVSSSTLMQPMPARDKVDDVPDADISSDVLIVYEVTPTPEQKALAEMLLLPLTFFC
YKNNPGYVSDESDIDDEDFETAVKNLNGILYPEDKKDKASAQLSGHSKEPTAESDQDCVI
VWEKKPTPEEKAKADSLKLPPTFFCGLGSDTDEDKDNLEDFDTEVRKVKEAKGVPEKDVN
SSYEAPIVCAAKTSVSLPPKQEPDSTTIISQEPVDLSSKQELPKTDSTSKGFSASSFSFG
LGTVSGVSFADLASENSGDYAFGSKDTSFQWANAGAAVFGSYSKSKKGEDEDGSDDEVVH
SDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAVNQWKERGVGDIKILFHKEK
GYYRVLMRRDQVLKVCANHVISTEIKISPLNTSTNSLVWTATDYSDGEGKVEQLAVRFKT
KELTDSFQSKFEECQQNLTEQS
NT seq
8529 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgaagtaaagcagagctccagagatacatagaaaatgcgcagaacagcgcgaca
tcacccagagagaaatcaatgaaaggatttctttttgctagactctactatgaggctaaa
gaatatgaacttgctaaaagatgtgtgtcttcgtacattagtgtacaggaaagagaccca
aaagcccacagattccttggacaactgtttgagattgaaggaaatgtggaaaaagctgtt
ggctgttacaagcgttcattggagttaaaccccactcagaaggatcttgttcttaggatt
gctgagttgatatgtactctaaatatcaaagatggcagagcagaatactgggtggacaga
gcatccaaactcttcccaggaagtcctgagatatacagacttaaagaacaactactttcc
tcacaaggagaagctgggtggaatcagctcttcgatttaatacaggccgaactttttgca
aggcccaatgatgtgtatgttaatatcaagcttgtagatttgtttctgtccaaccaaaga
ctggaggaagcagtttggcattgccttaaacccgagagaagagctttaaggacagattta
gaatggtgctcccgtgttgtccaagtatttaaggagtatctggcttcaaaacaagggcaa
aagaacaccaatgtgaagacaataacaaaggaactgttgcttgcgcattctgatgttgtc
cttttgactctttctaaaaaggatgtttggaagagtaaggaagcccttgaaagatttgac
caggccctcttgtcggtaaaacaatctgtgagtggtacagacgctactgatctgtctgta
acgttttatgaaatgagaggtcactactacatgcatgctgggaccctgctactgaaaatg
gctcagaactctgaagttcagtggaaggctttaattgaacctgctgctctctgctacctt
ctggcttatcaggttcctaagccaaaaagtaagcctgttaaaggggaggacaacggacaa
ggttttctagaaggattagcgtttgaccggcaaagtaaatctggtcacttattgctaact
ttgagccatggaaaagagaacttcattagtgaggttatagaaacttttgcaaaccaatgt
gggcagtctattttactgaagtttctgtttgaggacaatttatcgatgcaagattctttc
atgggtagcgatgatataagctatgccgagaatcgtgtgccggacctaaatgagctttcc
cagcttgacagtggttctcttcgaatacataatggtgatcttcagcacctaacttggctt
gggttgcagtggcactttctagcaaatttacctccatttcgcaagtggcttaaacaggtt
tttcctcgggtgccccaggaaacttcaagacttgagtccaatattccagaatctatctgt
cttctggatcttgaggtatttttgctggcagttgtgcatactagtcatcttcagttacaa
gataataacacaacagctgatccaaacagacctcgatgtcttcctcttcctatctgcaaa
cagctctttaccgacaggcagcggtcctggtgggacgctgtttacaaccttattacaaaa
aaatctttacctggcacctcagcaaagctgcgtcctgtgattcaacatgatcttactact
ctaagagctcaggaaaagcatggcctgcaacctgctgttcttgttcactgggcaaggagt
ctccacaaaacaggttacagtctgaattccttttatgaccaaaaggaatatatggggcgc
tgtgtccactactggaagaaacttttgccacttctagatttggtcaaacagaaaaaaagc
attcctgagccagttgatcctttgttcaagcactttcatagtaaagatattaagctttct
gaagtaaaagacttagaagatgacgcatgccttgcctttgcaacactggatttagttgac
ggaaaaacagaggatgcaataatagcatttgatgctgttaagaacgttgttgcctattgg
aaccttgctttgatataccagcgtaaggccgaagaaattgaaaatgattgtttgccagca
gaagaacaggaagagttccaggagtgcctgcttaagtgcaaaggctatttgaaaatgatt
tgtgatgaatataatgctgatccttccattgcaacattgttgccagttccagttgagact
gtgattgagatgctggagtcagtgaagcagaatcttggagaagcgatggaagatcgtagc
ctgggctttgtggaaaatcattcagcaataaaacattccacaccatcaccctccaagctg
tccatatcgcccagcaaaccaactcggttttctcccaaaacgccaccacgttgggcagaa
gatcaaaaatctctacttgaagtgctctgtaataaagtagaagcattgaagaaagaagtt
caagagctgaaacacaacaattcgaatgcaaacgcttcccctcatagatggcctaatgaa
ggatttgagcctgacagtgttgctgatggctaccaaggaactcaaagtttctatacagtt
cccctaacagtttccacttcaggacctgctgcttactatgcccagtcaccagcttataat
tctcagcatcttctcaggccagcagctaatattactccaacaaagacatctgtgtatgca
atgaacagattgcccccacaacaacatatgtatgcctatcctcaacctatgcatacaccg
ccaactcagcaaagttcagcagcatgtgtatttcctcaagaaatttatggtcctccactg
cgatttgagtctcccgcaactgcaattttgtcaccacataatgaagaattttacaattac
agtgttccaccagccagcacaaatccacccctgccagaacctggctattttactaagcct
tctacagcaatgcagcactccaaacaagaagttccaaaagtgtctgatttggggaaaggt
tgcttaggtcagtcaacatcagaaggtcaaaaaccatctccatttactggaccaatgcag
tctactccagcaccatcaactttcaagtttaactccaactttaaatccaatgatggggat
tttacattttcatcaagtcaagcaggagcgcagccaagtagtgcttatactggcagtgag
agccttttagggcttctgacgtctgatagaccaaccctagagcaagagaaaaaatcttct
agttttgagaaaattgccaatgatgaaaaaagcatgtttagatttggggaaaagagcttt
tcatcaggtttctctataactggaacacaaagtcaagataagaatcctttagtctttggc
cagactgaaaacatttttacttttaagagttctgcaaaatctacatttgcacctccaaca
tttggtgtccaacccaaagatgcacacaacctgagtgtggaatcagatgcaggaagtgaa
catgctgctgctgatgatgatggaccacactttgagcctattgtacctcttcctgaaaaa
attgaagtgagaactggagaagaggatgaagaagaaatgttttgcaatagagcaaaacta
tttagatttgatgcagaaacaaaggaatggaaggaaaggggtattggaaacgtaaaaatt
ttaagacacagggtatctggcaagattcgccttttaatgagacgtgaacaggtgcttaag
atttgtgcaaatcactacataaatgcagatatgaaactgaagccaaatgccacatcagat
aagtcttatgtgtggaatgcttacgactatgctgatgaaatgcccaagccagagcagctt
gctattcgttttaaaactgtagatgaggctgttcttttcaagacaaaatttgaggaggca
caaaggttactagctttgacagagtcccccgtggctccagttcaagaaaaaaatgcaaaa
tataagcagaaggtggattctagcaagccaaatgaaacaccccttacttttggatcacaa
tttgctttgaaaaggggagaatggcagtgtgattgctgccttgctaaaaatgcaccaacg
tccacttcatgtgtgtgctgtcaaacaccaaacaaaaaccagagcagcttaacaagttct
acatgcatatctgcaccatcttttacatttggcaaggaaagtgctactaataagcttgga
tttggtcagcaacttttaaaaaataaagaacaatggacatgtagcaagtgtttgcagaaa
aatgatgccctagtcagcctctgttcctactgccaaacccaaaatcaagcaaagactggc
atttctcaacctaacaaagccagtactggttttacaaacaatgtatctgctcagggtgat
agtttggcagcagtgtttggaaaaaaaccaggtcagtgggattgtgatgcatgttatgtt
agaaatgaaccttcagcaaataaatgtgtttcttgtcaaaatacaaagccattgagtaaa
gctgttgcccaagcagcatctttttcttttgctcctggtgctgataattcacaaaaaaat
tttggtgcccagtttgcaaagaaggaaggacaatgggattgcaattcatgtcttgtcaga
aatgaagcatctgcttcaaactgtgtagcttgccagagtgccaatccgcaggcaacaaat
aaagatgctgtaccacctgcccagaccccatctggcttcaaatttgggccttatgcagag
tttggtaaaacacaaccgagtttatcagctatgttttcacgcaaagagggtcagtgggag
tgcagtacatgcttagttataaacgatgcttcaaaagaaaattgtgctgcttgccagact
gctaaacctggctcatctgccagtcaaagcaaggaggtgccttttacttttggtattaaa
gcaaattcatcacagaattttgggcaacctgttgcgggatttaattgtgatttctctgga
aaagggttcaaatttggtattagtgacgaaaaatcatcagcatcaaactttgcgtttcaa
gcccctgtttccaatgatgaatcaaaggtggtaaaagagggctttaactttccattgtct
gccggtcctcttacttttaattttggaatatctgattcaaataagacaaaggaaatgtct
gctggcttcatgaagggtacttccacaaacgataaagagtctgaaacagctaagactact
acaaaatctgaaaaaagccaacaatgctctgataaagttctaggccagtctgtacagagc
ttttcttttgctgatatcgcaaaaacatctgatacagaaggatttaattttggtaaagta
gaccccaattttaaaggcttttctggtgcagggcaaaaactatttatctctcaaaatgcc
aaaagcaatgaagcagttgcatctaatgagcaggaagctacagatgatctttacaaaact
gaggaacgtgatgacatccattttgaaccaatagtccaacttcctgacaaagtagatctc
gtaacaggagaagaagatgagaaaactctgtattcacaaagggtgaaactgtacaggttc
gatgcaacaagcggacagtggaaagaacgtggagtaggaaatctaaagatccttaaaaat
gatgtcaatggaaaactgagaatgctcatgagaagggagcaagttctgaaagtgtgtgca
aaccactggataacgactacaatgaatctgaagcccttaacaggctctgaccgatcctgg
atgtggatggctaatgatttttctgatggagatgcaaggttagagcagttagctgcaaag
tttaaaacacctgagcaggctgaagattttaagactaagtttgatgagtgtcagcgtctg
ttattagatatccctctacagactcctcataagcttgtagacactggaagaacagctcat
ttgatacaaaaagctgaggaaatgaaaacaggcctaaaagatctaaaaacatttttaaca
gataaagctaaacctttggatgagtcaaatgtgactggctccactgaagtagtgaaacag
tcgcctgcagatggaactgaacccacatttgaatgggacacatatgatatgagaggagaa
gctcttgaagggaatttagatgactctatatatgcctctccactggcaagtagcccagag
aagaagaatttatttcggtttggtgaatcagcatcaggttttaactttagcttccaacca
gagccaagtccctcaaaatctccaacaaaattaaatcatagcagggtgtctgtgggcaca
gatgaggaatctgatgttacccaggaagaagagcgagatggccagtactttgaacctgtt
gttcctttacctgatttgattgaagtaacaagtggggaagaaaatgagcaggcccttttc
tgccatagagcaaaactttacagatttgataaagactcaaatcagtggaaagaaagagga
attggagacttgaagattttacagagattggataataaatctgcccgagttgtcatgaga
agggatcaggtattgaaactctgtgccaatcatcgcataacaacagatataaaccttcaa
ccaatgaaaggggctgaaagagcctgggtatggactgcacatgactttgctgaaggagaa
ggaaagacagaatgttttgctgtacgttttaaactacaggaggctgctgacttgttcaaa
gagggttttgaagaggcaaaagaggcacaagctaaaaactgcttgctcactccattttct
tctcgtggcacatcacccagagctgcttcatgcggaaaagctgcaatagcaatactagag
gaaactacaaaagagagaacagatcagcagcctgaggaagacacttcactgacagaagct
ggcacatcatctcctacagatcagcctgcaaaggccctggtttctcctgcaaaatttaca
tttggatctgatgctgtaaagaatatctttggtagtgagaagaagatgccttttgcattt
ggtaatacatcatccacaaggtcacttttcgggttcagcttcaatgcttctcaagaagaa
gtgcaaaagcagcctcccgaaatcactctggattttacttctaccattgaggctccggag
atgtctgctctacagaaatcatgtcaaggaagtgagcagagtcctatagtttcttcttct
ttgacatcatcatcagtatcatcatcaactcttatgcagcccatgccagccagagataag
gttgatgatgtccctgacgcagatatctcatctgatgtactcattgtatacgaggtgact
cctacccctgagcagaaagccttagcagaaatgctgctcctgccactaacctttttctgc
tacaaaaacaatcctggttatgtcagtgatgagagcgacattgatgatgaggactttgag
actgctgtaaaaaatctaaatggtattttgtatccagaagataagaaagataaggcatca
gcacaactttcaggtcatagcaaggaacctacagctgaatctgaccaggattgtgtaata
gtttgggaaaagaagcccactcctgaagaaaaagccaaagcagacagtctgaagctcccg
ccaacatttttctgtggtttgggtagcgacacagatgaagacaaggataacctagaagac
tttgatacagaagttagaaaagttaaggaggctaaaggagttccagaaaaagatgtaaat
agttcctatgaagctccaatagtgtgtgcagctaaaaccagtgtctccctgcccccaaaa
caagagcctgattccactacaatcatttcccaggagcctgtagacttgtcctcaaaacag
gagctacccaaaacagactccaccagcaaaggattttctgcttctagtttctcctttggg
cttggtacagtttccggagtgtcatttgcagatttagcatcggaaaattctggggattat
gcctttggttctaaagataccagcttccagtgggccaatgctggggcagcagtttttggt
tcttattccaaaagcaaaaagggggaagatgaggatggtagtgatgatgaagtggtacac
agtgatgatgtacactttgagcccattgtatccttaccagaggtggaggtgaaatcaggg
gaagaagatgaggagattcttttcaaagagagagcaaagttgtaccgctgggatagagcg
gtcaatcagtggaaagagagaggagttggtgacataaaaatactttttcataaagagaag
ggatattatcgtgttctgatgcggcgagaccaagtcctgaaagtgtgtgctaatcacgtc
atttcaacagaaataaagattagccccttaaatacatcaaccaattcgctggtatggaca
gcaactgactattcagatggtgaaggtaaagtggaacaattggcagtcagatttaagaca
aaggagttgactgattccttccagagcaaatttgaagaatgccagcagaatttgacagaa
cagtcttaa
DBGET
integrated database retrieval system
