Xenopus tropicalis (tropical clawed frog): 100135076
Help
Entry
100135076 CDS
T01011
Symbol
tnr
Name
(RefSeq) tenascin-R precursor
KO
K06252
tenascin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100135076 (tnr)
04518 Integrin signaling
100135076 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100135076 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100135076 (tnr)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100135076 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF_Tenascin
EGF_2
Fn3_ELFN
DUF4249
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
100135076
NCBI-ProteinID:
NP_001107287
Xenbase:
XB-GENE-948286
UniProt:
A9JRJ1
LinkDB
All DBs
Position
4:complement(98315866..98491483)
Genome browser
AA seq
1350 aa
AA seq
DB search
MGSEGVSSALGPLQVGVHLILLACLTRRSQCQSELTGQTPRLDIQVDKGGNMTDHGIENK
QNPMVFNHVYNFNVPLSFPCTLEPETPEDGSWVTQQTENTADAGSQITFTHSIRVPQRLC
QCYTTPHAVQHLLSRIEALEREVMLLRERCNDRACQDAEATGLTEFAPPCSGHGNFTVDS
CICNQGWGGENCSEPLCPLECSGRGTCIEGMCVCEPDYTGEWCTDLLCPEECSPHGLCQD
GQCVCQDPYIGIGCTELRCPGDCLGKGRCANGTCVCQDGYAGEDCGRMWCINACSGRGQC
QDGVCECEEGYSGQDCSEVAPPVDFSVTAVGDHWMDLAWEGTTAVTEYVISYQPAVPGEW
GTQQRLQQRVPGDWSSVTIRELEPGVTYNISVCSVISDIISEPASITISTHISSPRGLNF
MEVTQTSVEVHWDPPVFPLDGWEISFTPKNNEGGLTVQLPSSVTSFNQTGLKPGEEYTVS
IISLKDQARSPATSGSISTDIDGPTNILVRDVTDTVAFVEWTPARAKLDFMQLDYGPING
EGEKTTFRLQPPLSQYSMQVLRPGSQYEISIRGVRGDTESEPVRATFTTELDAPKNLRVI
SHASSTLELEWDNSEAEGEGYRVVYSTLAGDQYHELIVPRNYGQTTKATLTDLIPGTEYG
IGISAIRYNLKSAPATMNARTELDSPTDLMVTGSTDKSISLTWTKARGPIDHYRISFTPS
SGMASEVTVPSDISQYELSELEPGTEYTISIFAERGRQQSKETTIDAFTGFRPITQLHFS
AVTAYSVNVSWTDPSPPPDQFILTYNPIDSKDPLQLFLDPSLRQTRLSALQPSTEYMVTL
LPVHGTVRAELVEGTVTTGVAPPMDLSVINVTENSLAVVWRPPPSSLHHYRLTYQSTKGR
MDSVVIGNDQTRYTLANLMPNTEYKISLRSVRGREESERVGIVSWTAVDPPYGLRTSNIT
ATEALLHWEPPRSEVESYVIIVTHHAGSGETILVDGESIEFQLQNLLPRTNYSVTLSANF
GHQTSRSVGVSFTTILDPPMNLTATEVARTSALISWQPPISPIENYILTYKSANESRKEL
IVDAEDTWIRLEGLLESTEYTVSILSVQNGERSSVTHTVFTTGGRVFSYPQDCAQHMLNG
DNQSGVYYIYINGDMSQSVPVYCDMATDAGGWIVFQRRQNGLTDFFRKWADYRVGFGNLE
DEFWLGLDTLHQVTSQGRYELRIDMRDGQEAVYAYYNKFNIGDARSLYKLRIGDFNGTSG
DSLTYHQGRPFSTKDRDNDVAVTNCASSYKGAWWYKNCHRTNLNGKYGESRHSQGINWYH
WKGHEFSIPFVEMKMRPYNHRTMKKRSLQL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgagggtgtgagcagtgccttaggacctctgcaagtgggagtacatctcatc
ttgttggcttgcctaactaggcgctcacagtgccaaagtgaattaacaggccaaacacca
agactggacatacaggttgacaaagggggtaacatgactgatcatggcattgaaaacaag
cagaaccctatggtcttcaaccatgtctataactttaatgttcccttgagcttcccctgt
acacttgaaccagaaactccagaggatgggagttgggtgacacagcaaacagagaatact
gcagatgctggaagccaaataacctttacacacagcatacgtgtcccccagaggctgtgc
cagtgctacaccacacctcatgctgtgcagcatctcctgagcaggattgaagctttggaa
agagaggtgatgctgctcagggagcgatgtaatgacagagcatgtcaggatgctgaagct
acaggtctcacagagtttgcaccaccttgcagtggacatggaaacttcactgtagactca
tgtatttgtaaccaaggttggggtggtgagaactgctcagagcctctttgccctctggaa
tgctctggaagaggaacctgcatagaagggatgtgtgtatgtgagccagattacacaggg
gaatggtgcacagatctgttatgccctgaggagtgcagcccccatgggctgtgccaagat
ggacagtgtgtatgccaagatccatacattggaataggctgcacagagctacgctgccct
ggcgattgtttggggaaaggacgttgtgccaatgggacttgtgtttgccaggatggatat
gcaggagaagactgtgggcgtatgtggtgtataaatgcctgcagtggacgcgggcagtgc
caagatggggtctgtgagtgtgaagaaggatacagtgggcaggattgttcagaagttgcg
ccacctgtggattttagtgtaacagctgttggtgatcattggatggaccttgcatgggaa
ggaaccactgctgtgacagaatatgttatttcataccagccagcagtgccaggagagtgg
gggactcaacagcggctccaacagagggtcccaggagactggagttcagtaaccattagg
gagctggagccaggagttacatacaatattagtgtctgctctgtcatcagtgatattatc
agtgagccagctagtatcactatatccacacatatttcgtcaccacgaggattaaatttt
atggaagtgacacagacctcagtggaagtgcactgggacccaccagtgttccctctcgat
ggctgggaaataagcttcactcccaagaataatgaaggaggactgacggtccagcttcca
agcagtgtcacttcctttaaccagacgggcctaaaaccaggagaagaatacaccgtgagc
atcatttctctaaaggatcaggcacggagccccgcaacatctggcagcatttcgactgac
atagatggacctaccaatatcctggttcgtgatgttactgacacagttgcatttgtggag
tggacaccagctagagcaaaactggacttcatgcagcttgactatggacctataaatggg
gaaggggaaaagactacctttcgtctccagcctcctttgagccagtattccatgcaggtc
ctacgtccaggttcacaatatgaaatatcaattcgaggggtgcggggagacactgagagt
gaaccagtccgtgctactttcaccacagagttagatgctccaaaaaaccttcgagtgata
tcccatgcctcatccacattggaactggagtgggataacagcgaggctgagggtgagggc
taccgcgtagtctatagtacccttgctggggatcaataccatgaactcattgtgccaagg
aactacggccagaccactaaagctacacttacagatcttatcccaggaacagaatatggt
ataggaatttctgccatccgctataatctcaagagcgctcctgcaacgatgaatgcacgc
actgagttagacagtccaactgatctaatggtaactgggtccacagacaagagcatatca
ctgacctggacaaaagccagaggtccaattgaccattaccggatctctttcactccttcc
tctggcatggcttctgaagtcacagtccccagcgatatttcacagtatgaactctctgag
ttagaacctgggacagagtataccatctctatttttgcagaaagagggagacagcaaagc
aaagagacaactattgatgcattcactggtttccgccctatcacgcagcttcatttttct
gcagttacggcatatagtgtaaatgtgtcgtggactgacccttctccacccccggatcaa
ttcattctgacttacaaccccattgacagcaaagatcctctacagctctttttagacccc
tcgttgagacaaaccagactttcagctcttcaaccttccacagaatacatggtcaccctt
ctaccagttcacggaactgtcagagcagagcttgtggaaggcacagtcacaacaggtgtg
gctcccccgatggacctttctgtaataaatgtcactgaaaactcattggctgtggtgtgg
agaccacctccttcctctttacaccactacagactaacttaccaatctaccaaagggagg
atggacagtgtggtgattggaaatgaccaaacacggtataccctggcaaatctcatgcct
aatacagaatacaagataagtttgagaagtgttcgagggcgtgaagagagtgaacgtgtt
ggcattgtgtcatggacagctgttgatcccccatatggcttgaggaccagcaatatcact
gccacagaagcccttctacactgggaaccaccacgatcagaagtggagagctatgtcatc
atagtaacacaccatgcaggttcaggagaaacaatccttgtggatggggagagcatagaa
tttcagctgcagaaccttctcccacgcaccaattattcagtgacactatctgctaatttt
gggcaccaaaccagtcgatctgttggggtcagcttcacaacaattctggatccacccatg
aatctgactgccacagaagtggcaaggactagtgcgttaatttcttggcagccacccatc
tctcctattgaaaattacatcctcacttataaatctgctaatgagagccggaaggagctg
atagtagatgctgaggacacatggatccgcctggaaggcttactggagagtacagaatac
actgtgagcattctgtctgtgcagaatggggagcggagctcggtcacccacactgtattc
actacaggagggagggtgttttcctacccacaagactgtgctcagcacatgctgaatgga
gacaaccagagtggagtctattatatttatatcaatggtgacatgagccaaagtgtccct
gtatactgtgacatggctactgatgcaggaggctggattgtatttcaaagacgccagaat
ggattgacagattttttccgcaagtgggcagattatcgtgtaggttttgggaacctggag
gatgagttttggctgggacttgacactcttcatcaggtgacctctcaggggcgctacgaa
ctgcgaattgatatgcgggatggacaagaagcagtctatgcatattataataagttcaac
attggcgatgcccgaagtttatacaagctgcgtatcggggacttcaatgggacatcaggt
gattcactcacttaccaccagggacgaccattctctacaaaggatagagacaatgatgtt
gctgtaacaaattgtgcctcttcatataaaggagcatggtggtataagaactgtcaccgt
acaaacctgaatggcaaatatggtgaatcccggcacagccagggaataaactggtaccac
tggaaaggtcacgagttttccattccttttgtggagatgaagatgcggccatataatcat
cgtaccatgaaaaaaaggtccctccagctttga
DBGET
integrated database retrieval system
