Xenopus tropicalis (tropical clawed frog): 100135081
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Entry
100135081 CDS
T01011
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100135081 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100135081 (nup188)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100135081 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
100135081
NCBI-ProteinID:
NP_001107292
Xenbase:
XB-GENE-5933085
UniProt:
F6WXT2
A0A5S6M1K6
LinkDB
All DBs
Position
8:complement(22836127..22854354)
Genome browser
AA seq
1739 aa
AA seq
DB search
MAAAGCLYRRTSRELWTILLGRSSMKDGHQIKAELDRYGDRLLQGLAYYRPPSTSSTGKV
KANKNLSPALQELGLRLSKFLGLDEEQSVELLQTYLLYDYRGTQESVKGVPQDERQSQAL
MLKMVDYYYEERISLLRCVLYILNYFQDDKHPYSAEFSKCVEMMEQKELFGKYLKQFESL
CREEAPTWETHGNFMTERQVSRWFVQRLREQAMLLEIIFLYFACFAASPSDLLALTKLFK
EQGFGCRLQNRHLVEPSMDPLVERIGYFSVLIFLEALDIETLMTCSLSDKTEQHPFSSEE
QVCKEMDSVLVTLGDAPHHGPVLLAWALLRFALNADKVTPTVRKMGSTAIQLHIFQYLTR
MLQSLRSGENNCTTSTACLCVYTFLTFVLTNLEEQVLQSQQDLVDTAFQVFAAPNLPDLF
WNMEPTAGLGILLDSVVGMFPFHLSPLLKLFTALVSKSSAKKVYSFLDRMSSYTEHYRHK
PHDILSHEDETLWKRQTPKVLYALGLGQTNLRIPQGTIGQVMADEHGFLVRWEYSYSCWT
LFTCEIEMLLHVVSTADVIHQCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVMNPPMDFLSSCVDCLAALATRMPAKVWIDLRHTGFLPFAANPVSGHIISTEGMNAGG
YGSLFGIEQSQGEYSITLSFLRLVTTLVKGQLGSTQSQGLVPCILFVLREMLPNYHRWRY
NSHGVREQLGFQILSLIHAILNLSPEEEESTSTPNLQSLCIFSLTNTEAGQAVINIMGVG
VDTLNAVMLTQAGSSGTEGQGQMLMQTIKLAFSITNNVIRLKPLSSAISPLEHALTQHGA
HGNNLIAVLAKYIYHKYDPSLPRLAIQLLKRLAMVAPMSVYACLGSDAAAIRDAFLSRLR
DNIEDMQIKIMILEFLTVAVETQPGLIELFLNLEVKDTNEGSKEYSLGEWSCLQVVLKLI
DSQDPESSWGAPLLHRSAIAFLHALWQDRRDSAMTVLRTKPNFWENLTSPLFGTLAFPSE
SSELSILETCAFIMKIICLEIYYAVRGSLGDSLKKILKKFSEEERFTYWSNYVHSLVCQV
AESEGACNSLTEYQQLLSAWRMFLMVATHNADVMHLTNPEVRQKLFKDVLGGTQALLLVP
RSMTCLHLGSMLCTVMIILLRRWKSDLAAPEDILSSLTQILEGVLQKDQQLVEKTKARVF
AALISALEIKPMKASEIPQYPQLVLNVCETLQEEVVFLVDHTRQEVPANDASEDKDSMET
EDTGRIRQKDQRDGVCVLGLHLAKGLCEADEEGDQWQQVLRKLPVLPMLFSALEVSLRIK
QNLHFCEAILHFLFTLAKTHQGAAAMAGAGVTQTVCLPLLSVYQLSSNGASTAQPALSLR
KSLDAPSWPGVYRLTVSLMERLLKTLRYNFLTEALDFVGVHQERILQCLGAVRTVPSLAC
LEEADHTVGFLLQLSNFTKEWHFHLPQLIKDVQVNLCYLCQACTSLLHSRKMLQHYLQIK
NGETMSSTATPRGQRTPQTPSKQPTAESEALELRQLRSVQHSLLKILGKTLATLRAFTPD
LCQILQVQPLDLAQYNLLFALSFTTPAFDADVTPSFGTLLATVNVTLSMLGEMDKKKDHP
LGQVLGETNSTVDNKNIKSLLLFIMENCFYLLISQAVRYLRDPSVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPAGGLMPSPQPKGASAAKVVPEAQEPLIQLVQAFVRHVQR
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgggtgtctgtaccggaggaccagccgagagttatggaccattctgctt
ggacgctcttccatgaaagatgggcatcagatcaaagcagagctggacagatatggagac
cggctcctgcagggactggcatactacaggccccccagcacaagctccacaggcaaagtg
aaagccaataagaatctgtcccctgccctacaggagcttggtttgcgactcagcaaattt
ctgggcctggatgaagagcagagcgtggagctgttacagacttacctgctgtatgattac
agagggacacaggaatctgtaaagggtgtgccacaagatgagaggcagagtcaagcactg
atgctgaagatggtagattactactatgaagagagaatttccctgctgcgctgtgtcctg
tacattctgaattatttccaggatgacaagcatccctatagcgcagaattctccaaatgt
gtggaaatgatggagcagaaggaattattcggcaagtacctgaagcagtttgaaagcctc
tgcagggaggaggccccaacatgggaaacacatggaaacttcatgacggagcgccaggtg
tcccggtggtttgtgcagcgattgcgggagcaggccatgctcttggagatcatattccta
tattttgcctgttttgctgcttccccatccgacctgctagcactgaccaaactgttcaag
gagcaaggcttcgggtgcaggctgcaaaaccgccaccttgtagaaccatcaatggaccct
ctggtggagagaatcgggtacttctctgttttaatctttttggaagcgctagacattgaa
actcttatgacctgctctctcagtgataaaacagagcagcatccattttcttctgaggag
caggtctgcaaggagatggacagtgttttggttacgctgggagacgccccacaccatgga
cctgtgctgctggcctgggccctgctgcgttttgctctgaatgctgacaaggttaccccc
actgtccgtaaaatgggcagcaccgccatccagctccatatctttcagtacttaacccga
atgcttcaatctcttagaagtggggagaataattgtacgaccagcacggcttgtttgtgt
gtctacaccttcctgacttttgtgctcacaaacctagaggaacaagtcttacagagccag
caggatcttgtagacacagctttccaggtgtttgctgctccgaatctgcctgatctgttc
tggaacatggaacccacagcaggcctggggatccttctggacagcgtggttgggatgttc
ccctttcacctctcgcctctcctgaagcttttcactgcgcttgtctccaagtcttctgca
aagaaggtgtacagttttctagaccggatgtcctcttacacagagcactaccgccacaag
cctcacgatattctctcgcacgaggatgagacactatggaagagacagacccctaaagtg
ctgtatgcactaggactgggacaaacaaacttgcgcatccctcaagggaccatagggcag
gtgatggccgatgaacatggcttcctggtccgctgggagtattcctacagctgctggact
ctgtttacctgtgagatcgagatgctgctgcatgttgtgtccacagctgatgtgatccac
cagtgccaaagggtgaaacccatcattgacctagttcataaggttatcagcacagacttg
tccatagctgactgtcttctgcccatcacatcccggatttacatgctcctacagaggtta
acgacagtaatgaacccgccgatggatttcctctcttcttgtgttgactgcctcgctgct
ttagccacacgtatgcctgcaaaggtttggatagacctacgacacacagggttcttgccc
tttgcagcaaatcctgtctctgggcacatcattagcactgaagggatgaatgctggcggt
tacggctcacttttcggcattgagcagtcacaaggggaatacagcatcacgctctctttt
ctccgtctggtcaccaccttagtgaaggggcagttgggaagcacccaaagccagggcctt
gtgccctgtatcctgtttgtgctgcgtgaaatgcttcctaactaccacaggtggcgctat
aatagtcacggcgtgagagaacaacttggcttccagatcctgagtttgattcatgcaatc
ctcaacttatcccctgaggaagaggagagcaccagcaccccaaacttgcagtccctgtgc
atcttcagcctgacaaacactgaggcaggacaggcggtcattaacatcatgggggtcgga
gtggacacgctcaatgcggtcatgctgactcaggctgggagcagtggcacagagggccaa
gggcagatgctcatgcaaaccatcaaactggctttttccatcaccaataatgtgatcaga
ctgaagcccctttctagtgccatctcgccactggagcatgcactcactcagcacggagct
catgggaacaatctaattgctgtcctggccaaatatatttatcacaaatatgatccgtcg
ctgccccggctggccatccagctgctgaaacgcctggccatggtggcacctatgtcagtg
tacgcctgtttgggcagtgatgcagccgccattagggatgccttcctgagccgcctgcgg
gataacattgaggacatgcagatcaagattatgatattggaattccttactgttgccgtg
gagacgcagcctggactcattgagcttttcctcaatttagaggtgaaggacacaaacgag
ggctcaaaggagtacagcctcggggagtggagctgtttgcaggttgtgctgaagcttatt
gattcccaagatcccgagagctcctggggagcccctctgctccaccgctcggccatcgct
ttcctccacgccctttggcaggatcggcgggacagcgccatgactgtgctcagaaccaag
cccaacttctgggagaacctgacaagccccctgtttgggacactggcgtttccatcggaa
tcctcagagctgagcatcctggagacctgcgctttcataatgaaaattatttgcctcgag
atttactatgcagtgaggggttctcttggtgactccctgaaaaagatcctaaagaaattc
tctgaggaagagcgattcacttactggtctaactacgtacattccttggtgtgccaggtg
gctgagagtgagggggcctgtaactcgctcactgagtatcagcagctgctgtcagcttgg
cggatgtttctcatggtcgccacgcacaatgcagatgtaatgcacctgaccaatcctgag
gtccgacagaagctatttaaggatgtcttgggcggcactcaggctctgcttcttgttccc
agatccatgacttgcctgcacctcggctccatgctttgcactgtgatgatcatcttactc
aggaggtggaaaagtgacctagcagcgcctgaggacattctcagctctctgacacagatt
ctggagggggtcctgcagaaagatcagcagctggtggagaagaccaaagcccgagtcttt
gccgccctcatctctgcgctagagataaagccaatgaaagccagtgagatcccccagtac
ccccaattggtgctcaatgtgtgcgagaccctgcaggaagaagtggtgtttcttgtggat
cacacacgccaagaggtccccgctaacgacgcatccgaggacaaggacagcatggagacc
gaggacacaggccggatccggcagaaggaccagcgtgatggagtgtgcgtgctggggctg
catttggccaagggactgtgtgaggcggacgaggagggtgaccagtggcagcaggtactc
aggaagcttccagttctgcccatgctcttcagtgccctggaggtcagcctgcgcatcaag
cagaatctccacttctgtgaagccattctccacttcctgttcactctagcaaaaacacac
cagggagccgctgccatggcaggtgctggcgtcactcagactgtgtgtttgcctcttctt
agcgtgtaccaactgagttccaatggggccagtacggctcagccagctctgtcgctccgc
aaatccctggatgccccttcctggcctggggtctaccgacttactgtgtcactcatggag
cgcctgctgaagaccttgaggtacaacttcctgaccgaggcgctggactttgtaggagtt
catcaggaacggattctacagtgtctgggcgctgtgcgcaccgtaccgagcctggcctgt
ttggaagaggcagatcatacggtgggctttctgctgcagctttccaacttcaccaaagag
tggcatttccacctcccgcagctgattaaggatgttcaggtgaatctctgttacctgtgc
caggcctgcacctctctcctgcacagccgcaagatgctgcagcactacctacagataaag
aatggagaaaccatgtcctccactgcaacccctcgtgggcagcgcactccccagacgcca
tctaagcagccgacagcagagagtgaggcgctggagctgaggcaactgcgttctgttcag
cacagcctcctgaaaattttgggcaaaactctggccaccctgcgagcatttacccctgac
ctctgccaaatcctccaggttcagcctctggacctggcccaatataatctcctgtttgca
ctgagtttcaccacaccagcttttgatgcagacgttaccccttcctttgggaccctttta
gctaccgtgaatgtaacgctgagcatgctgggagagatggataaaaagaaagatcacccc
ctcggtcaagtactgggagagaccaacagcacagtagacaacaagaacatcaagtctttg
ctgctcttcattatggagaactgcttctacctgttgatatcacaagctgtgcgttacctt
cgggacccttccgttcacccccgggacaagcagcgcatgaagcaagaactaagctcggag
ctgagtaccctgctgtccagcctgtctcgttacttccggagaggtggcccctcgtctcct
gccggcggcctcatgccctcccctcagcctaagggtgcatcggctgcaaaggtggtccct
gaagcccaggagcccctcatccagctggtacaagcctttgtgcgccatgtacagagataa
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integrated database retrieval system
