Xenopus tropicalis (tropical clawed frog): 100135173
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Entry
100135173 CDS
T01011
Symbol
eif4a3.1
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100135173 (eif4a3.1)
09122 Translation
03013 Nucleocytoplasmic transport
100135173 (eif4a3.1)
03015 mRNA surveillance pathway
100135173 (eif4a3.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100135173 (eif4a3.1)
03041 Spliceosome [BR:
xtr03041
]
100135173 (eif4a3.1)
03009 Ribosome biogenesis [BR:
xtr03009
]
100135173 (eif4a3.1)
03012 Translation factors [BR:
xtr03012
]
100135173 (eif4a3.1)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100135173 (eif4a3.1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100135173 (eif4a3.1)
mRNA cycle factors
Stress granule specific factors
100135173 (eif4a3.1)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
EJC/TREX
100135173 (eif4a3.1)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
90S particles
Helicases
100135173 (eif4a3.1)
Translation factors [BR:
xtr03012
]
Eukaryotic type
Initiation factors
eIF-4
100135173 (eif4a3.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
100135173
NCBI-ProteinID:
NP_001107349
Xenbase:
XB-GENE-5773453
UniProt:
B7ZTW1
LinkDB
All DBs
Position
5:complement(38840107..38846947)
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AA seq
415 aa
AA seq
DB search
MAAVAVTAVAGVTSGSSRKRLLREEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAY
GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTR
ELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSL
RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDP
IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK
MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN
NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtagcagtaacagcagttgccggagtgaccagcgggtcaagccgtaagcgg
cttttacgggaggaagatatgactaaggtggagttcgagaccagtgaggaggtggatgta
acgccaacttttgatacgatggggctgagggaagaccttctgagaggcatctatgcttac
ggatttgagaaaccatcagcaatccaacagcgagcaatcaagcagattatcaagggaagg
gatgtgatcgcacaatcacagtctggtacaggcaaaacagcaaccttttgtgtttctgtg
cttcagtgtttggatattcaggtccgtgaaacccaagccttgattttagcaccaaccaga
gagttagctgggcagattcagaaggtgctacttgctttgggtgactacatgaatgtgcag
tgtcatgcatgtatcggaggcacaaatgttggagaagatatccggaaattggattatggg
cagcatgttgttgctggcacaccaggacgtgtttttgatatgattcgacgcagaagttta
agaactcgggccattaaaatgttagtgctggatgaagctgatgaaatgttgaataagggt
tttaaggagcagatttatgatgtctatagatacctgccacctgcaactcaagtttgttta
atcagtgccacgctgccacatgaaatcctggaaatgaccaacaagtttatgactgatccc
atccgtatccttgtgaaacgtgatgagttgacgctggaaggcatcaagcagtttttcgtg
gcagtggagcgagaagagtggaagtttgatactttgtgtgatttatatgacacattgact
attacgcaagctgtgatcttctgcaacacgaagagaaaggtagattggttaacagagaag
atgagagaagcaaacttcacagtttcatcaatgcatggagacatgccccaaaaggagaga
gagtcaatcatgaaagaattcagatctggtgcaagccgagtcctcatttcaactgatgtc
tgggccagaggattggatgttccacaggtctccttgattatcaactacgatctccccaat
aacagagaattgtacatccacagaattggccgatcgggacgatatggaagaaagggtgtt
gccattaactttgtcaagaatgatgacatccgtatcctgagagatattgagcagtactac
tcgacccaaattgatgaaatgcccatgaatgttgctgatctcatttga
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