| Entry |
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| Symbol |
upf1
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| Name |
(RefSeq) regulator of nonsense transcripts 1
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| KO |
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| Organism |
xtr Xenopus tropicalis (tropical clawed frog)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:xtr00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100135270 (upf1)
03015 mRNA surveillance pathway
100135270 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:xtr03019]
100135270 (upf1)
Enzymes [BR:xtr01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100135270 (upf1)
5.6.2.5 RNA 5'-3' helicase
100135270 (upf1)
Messenger RNA biogenesis [BR:xtr03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100135270 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100135270 (upf1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:complement(98855981..98884078)
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| AA seq |
1100 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQNQLDGQVNG
PDGMLQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMIGSGPSHVTAM
NIPIPFNLVMPPMPPPGYFGQANGPAPGRGMPKGKATRGGRQKQRGIGLPGMSQGNMPNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY |
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| NT seq |
3303 nt +upstreamnt +downstreamnt
atgagcgtggaggcgtacgggcccagctcgcagaccctcactttcttggatacggaggag
gccgagctgctcggggccgacactcagggctcagagtttgagttcacagacttcacgctg
cctagccagacacagacacaagggcaaagccagaaccagctggacgggcaggtaaatgga
cctgatggcatgcttcaaaatggcacagtggatgatggtgttggcaaaactagccagttg
ttgggtgaattgaactttgaggaagatgaagaagacacatattatactaaggatcttcca
gttcatgcttgcagttattgtggcatccatgatccagcctgtgttgtgtactgcaacacc
agtaaaaagtggttttgtaacggccgaggaaacacttcaggcagccacatcgtaaaccat
ttggtccgagctaaatgtaaggaggtaacactccacaaagatggacctttgggggaaacc
gtgctggaatgttacaactgtgggtgtcgtaatgttttccttcttggttttattcctgct
aaagctgactctgtggttgtactactttgcagacaaccttgtgccagtcagagcagcctt
aaggatatcaactgggatagctcccagtggcaacccctcattcaagatcgctgcttcctt
tcttggctggtaaagataccttctgagcaggagcaactaagagcccgtcaaattacagct
cagcaaatcaacaaactggaggaactgtggaaggaaaacccttcagcaaccctagaagac
ctagaaaagcctggtgttgatgaggaaccacagcatgtcttgctcagatatgaagatgcc
tatcagtaccaaaatatctttggtccacttgtcaaacttgaagctgattatgacaagaag
cttaaagaatcccagacccaagataacataacagtgaggtgggacctaggtctcaacaag
aaaagaattgcatacttcacactgcctaagactgattcagatatgcgtctaatgcaaggt
gatgagatttgtttgagatacaaaggagatttggcacctctttggaagggcatcggtcac
gttattaaagttcctgataattatggtgatgaaattgccattgagttgagaagtagtgtt
ggtgcaccagttgaagtcactcataatttccaagttgactttgtctggaaatcaacttca
tttgacagaatgcagagcgctttgaagacctttgcagtggatgaaacctccgtttcaggt
tatatttaccataaacttttgggacacgaagttgaagatgtgattataaaatgccaactt
ccaaagcgatttacagcacaaggtcttccagatcttaaccactcgcaggtttatgcagtt
aagactgtattgcagcgcccactcagtctcattcagggcccacctggaactggtaaaact
gtaacatcagccaccattgtttatcatctggcaaggcaaggaaatggacctgtcctggta
tgtgcaccaagcaacattgctgtagaccagcttactgaaaaaatccaccaaacaggcctc
aaagtggttcgtctctgtgctaagagccgtgaagctattgactcacctgtttcgtttttg
gctttgcacaaccaaattcgcaatatggaaagtatgcctgagctccagaagttacaacag
ttgaaagatgagactggagaattgtcctcagctgatgaaaaacgctatcgtgccttgaaa
agaactgctgaaagagagttacttatgaacgctgatgtgatttgctgtacttgtgtgggt
gcaggtgaccctagacttgcaaagatgcagtttcgctctattttaattgatgaaagcact
caagccacagaaccagagtgcatggtgccagttgttttgggagccaaacagcttattctt
gtgggtgaccactgccagcttggcccagttgtaatgtgcaagaaggcagcgaaagcagga
ctgtctcagtctctttttgagagacttgtagtactgggtatccgaccaattcgtttgcag
gttcagtaccggatgcatcccgctttaagtgcttttccatcaaatatattttatgaagga
tctcttcagaatggtgttactgcagcggaccgtgttaagaaaggatttgacttccagtgg
cctcagccagataaaccaatgttcttttatgtgacccaaggacaggaagaaattgccagt
tctggtacttcttacttaaacagaactgaagctgctaatgtggagaagatcacaacaaag
cttcttaaggcaggagctaaaccagatcaaattggaataatcacaccatatgaaggccag
cggtcttacctggtgcaatatatgcagttcagtgggtccttgcatacaaaactttaccag
gaggtcgaaattgcaagcgtggatgcttttcaagggcgtgaaaaagactttattattcta
tcttgtgtacgagccaatgagcatcaaggaattggattcttgaatgatcctcgtcgtctt
aatgtggctttaactagagcaaggtatggggtaataatagttggaaatcccaaagctctt
tccaagcaacctttgtggaatcatctcctgaattattacaaggaacagaaagttcttgta
gagggtcctttaaataatttaagggagagtctaatgcagttcagcaagcctcgcaaactt
gtcaacacaattaatcctggtgcccgtttcatgacaactgcaatgtatgatgctcgtgaa
gccatcatccctgggtctgtgtatgaccgaagcagtcaaggacgtccctcaaacatgtac
tttcaaacccatgatcagattggcatgattggctctggacctagtcatgttactgctatg
aacattccaataccattcaatctagttatgcctccaatgccaccacctggctattttgga
caggcaaatggaccagctccaggacgtggtatgcctaaaggaaaggcaacacgcggtggg
cgtcagaaacagcgaggcattgggcttccaggcatgagccaaggaaatatgccaaacagt
caggccagtcaagatgttgtatcccaaccattctctcaaggccctctaacccagggttat
atttccatgagccagccatcccagatgagccaaccaggactttcccagcctgagttatca
caggatagctatcttggtgatgaatttaagtctcagatcgatgttgcattatcgcaagac
tctacataccagggagaacgtgcgtatcaacatggtggtgtgactgggctatcccagtac
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