KEGG   Xenopus tropicalis (tropical clawed frog): 100135350
Entry
100135350         CDS       T01011                                 
Symbol
kdm4a
Name
(RefSeq) lysine-specific demethylase 4A
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xtr03036]
    100135350 (kdm4a)
Enzymes [BR:xtr01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     100135350 (kdm4a)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     100135350 (kdm4a)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100135350 (kdm4a)
SSDB
Motif
Pfam: JmjC Tudor_2 zf-HC5HC2H_2 JmjN zf-HC5HC2H PHD_2 Rad9_Rad53_bind PHD Tudor_5 PHDvar_NSD DUF4537 LBR_tudor PTM_DIR17_Tudor
Other DBs
NCBI-GeneID: 100135350
NCBI-ProteinID: NP_001107498
Xenbase: XB-GENE-1010381
UniProt: A9UMG7
LinkDB
Position
4:89656822..89675204
AA seq 1006 aa
MAGENENPNSSLRIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRTCYD
DLDDLVIPAPIQQVVTGQSGLFTQYNIQKKPMTVKEFRRIANSDKYCTPRYVDFEDLERK
YWKNLTFNAPIYGADVNGSLYDKHVDEWRISRLNTILDVVERESGITIEGVNTPYLYFGM
WKTSFAWHTEDMDLYSINYLHFGEPKSWYSIPPEHGKRLERLAKGFFPGSAQSCEAFLRH
KMTVISPFILKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATMRWIEYG
KQAVLCSCRKDMVKISMDVFVRKFQPERYKLWKAGKDSTVIDHTLPTPEAAKFNDEQAET
EQKKSVAKHRIGTKRHRVCLEVPEELSESGDFPKEELCPESANMESTCVGKNEETESCQD
ECTEPGSSGQVFETLKNVEDFSLAEQDSISQPGSPSTSAESSTSSSSSQDSSPDSSGSSD
TDSEAQQSASCGKLHSYAKAQGSAHIRKKTSSMASFSEHDLEEVAGKHIKSLKENRNSKS
RRQPLSKLPRYHPLVMKDSGSDDDQPDQLLMDEEFEESETWAKSLSQLWQNRPPNFQAEK
EYNIAASLLPPHCTVCMLFKAYYQPECVGENNISDPSSVGFHLKTKPLIPEMCFTTTGTN
TEINLSAPFLEDDGTSILITCKSCCVCVHASCYGVSKEKAVEGWLCSRCEENALTEDCCL
CSLRGGALQKANDNRWVHVMCAVAVTEAKFVNIAERSPIDISKIPLQRFRLKCAFCKKRR
KRVSGCCVQCSHGRCPTSFHASCAQAAGVMMQPDDWPFVVFITCSRHKALQNEGKESIRD
IVIGQAVISKHKNGRYYQCEVVKLTKETFYEVNFDDGSFSDNLYPEDIVSRDCLNLGPPS
AGEVVQVRWTDGLVYGAKFVASHTIQMYQVEFEDGSQLGVKREDVYMLDEELPKKVKSRL
SVASDMRFTEIFTEKEVKQEVKRQRVINSRYREDYIEPALYRAIME
NT seq 3021 nt   +upstreamnt  +downstreamnt
atggctggggaaaatgaaaacccgaattcgtctttgcggatcatgacgttttatccaaca
atggaagagttccgcaacttcagtcgttacatagcatatattgagtcccaaggggcacat
cgcgctggtctggcaaaggtggttcctccaaaggagtggaaaccgcggacttgttatgat
gacttggatgatcttgtgattccagctccaattcagcaggtggtcactgggcaatcgggg
ctcttcactcagtataatatacagaaaaagccgatgactgtgaaagaattcagacgtatt
gcaaacagtgataagtattgtactcctcgctatgtagattttgaggacttggagcgcaaa
tactggaaaaatttaacattcaacgcaccaatttatggagcagatgtaaacggttcctta
tatgacaagcatgtggatgagtggaggattagccgcctgaatacaatactggatgtggtg
gagagagagagtgggatcacaatagaaggagtgaacaccccatacttatactttggcatg
tggaaaacctcctttgcttggcatactgaagatatggacctttacagcatcaattacctg
cattttggtgaaccaaaatcatggtattccattcctccagagcatggaaaacggctggag
aggcttgccaaaggtttttttcccggaagtgctcagagctgtgaagcctttttacgtcat
aaaatgactgtgatctcaccatttatactgaaaaagtatgggataccatttgataaggtt
actcaagaggctggagaatttatgatcacctttccttatggttaccatgctggttttaat
catggattcaattgtgccgaatctacaaattttgctacaatgagatggattgaatatgga
aagcaggctgttttgtgctcttgcaggaaagatatggtgaaaatctccatggatgtgttt
gtgagaaaattccagccagagcgttacaaactgtggaaagctggaaaagattctactgtg
attgaccacactcttcccactccagaggctgccaaattcaatgatgaacaggcagagaca
gagcaaaagaaaagtgtggccaaacaccgtataggaacaaaaaggcaccgtgtttgttta
gaggtaccagaagagctgagtgaaagtggagactttcccaaggaagagctctgccctgaa
tcggcaaatatggaatccacctgtgtgggtaaaaacgaagaaactgagagttgtcaagat
gaatgtactgaacctggctcttcaggacaagtctttgaaacactcaaaaatgttgaagat
ttcagtcttgccgagcaggactccatctctcaaccaggaagtccctccactagtgcagaa
agctcaacatcctcttcttcctcgcaagatagttccccagacagctcagggtcatcagat
acggactctgaagcacaacagtctgccagttgtgggaagcttcacagctatgccaaggca
caaggcagtgctcacataaggaagaaaacaagcagcatggccagcttttcagagcatgat
ctggaagaggtagctggcaagcacataaaatctttgaaggaaaacagaaattccaagagc
cgccgacagcctctgtccaagctgccacgttatcatccactagtgatgaaagacagcggc
agtgatgatgatcaaccagaccagctgctgatggatgaggaatttgaggagagtgagaca
tgggcaaagtcccttagccagctttggcagaatcgaccaccaaatttccaggctgaaaaa
gagtacaatattgcagcttctcttcttccacctcattgtactgtctgcatgcttttcaag
gcctactatcagcctgaatgtgtgggagagaacaatataagtgatcccagcagtgttgga
ttccacctgaagacgaagcctcttatcccagaaatgtgcttcacaacaacaggaactaac
accgagattaatctgtctgctccttttctggaagatgatggaactagcatcctaattacg
tgcaaaagctgctgtgtgtgtgtccatgccagctgttatggagtctccaaagaaaaggct
gtggaagggtggctgtgttctaggtgtgaagaaaatgccctgacagaggactgctgtctc
tgttctttaagaggaggagcactacagaaagcaaatgacaaccggtgggttcatgtgatg
tgtgctgtggcagttacagaggcaaaatttgtgaacattgcagagaggagtcctatagat
ataagcaaaattccgctgcaaaggtttagactgaagtgcgcattctgcaagaaaaggagg
aagagggtttctggatgctgtgtacagtgttcccatggacgctgccccacttcctttcac
gcctcctgtgcacaagctgccggtgtgatgatgcagccagatgactggccatttgtggtt
ttcattacttgttccaggcataaagcattacagaatgagggcaaagaatcaatcagagat
attgtgattgggcaggctgtgatcagcaaacacaagaatggtcgatactaccaatgtgaa
gtggttaaactgaccaaagaaacgttctacgaggtcaatttcgatgatggctccttcagt
gataatctgtatccagaggatatagtgagccgtgactgcctcaatttgggtcccccttca
gctggagaagttgtgcaagttcgctggacagatggattggtctatggtgccaagtttgtg
gcatctcatactattcaaatgtaccaggtggagtttgaggatggatctcagttgggtgtt
aagcgtgaagatgtgtatatgctcgatgaagagctaccaaagaaagtaaagtcccgactg
tctgttgcatctgacatgcgctttacagaaatctttacagaaaaggaagttaagcaagag
gtaaagagacagagagtcatcaactcaagatatagagaagactacattgagccagccctg
taccgtgccatcatggagtaa

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