Xenopus tropicalis (tropical clawed frog): 100144665
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Entry
100144665 CDS
T01011
Symbol
optn
Name
(RefSeq) optineurin isoform X3
KO
K19946
optineurin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04137
Mitophagy - animal
xtr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100144665 (optn)
04137 Mitophagy - animal
100144665 (optn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100144665 (optn)
Membrane trafficking [BR:
xtr04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
100144665 (optn)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
100144665 (optn)
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100144665 (optn)
Xenophagy
Cargo receptors
100144665 (optn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CC2-LZ
NEMO
zf_C2H2_10
Bap31_Bap29_C
Motif
Other DBs
NCBI-GeneID:
100144665
NCBI-ProteinID:
XP_004913095
Xenbase:
XB-GENE-943658
UniProt:
F6Z6G3
LinkDB
All DBs
Position
3:complement(81940777..81958744)
Genome browser
AA seq
530 aa
AA seq
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MENGLLKHPHVINMENGHQDASCDVFSMKNDAEMLEQIKQLLMENNNLKETMKQMNQEMK
ERLEELLKRHNQHLLDLNSENELLRKELNSLREKNATSNQGIPVCSNPEETSESKQLKTQ
LMRLQAEKADLLGLISELQLKLSGFSEDSFVEIRISEKESGEIIHEEKANKTLPDYDVSY
SRTNSVKEEGSGTEPEEVAISRLLRSLREETQKVERLEKELSEHKRLAELKEKTSRFCDK
DMQTEQEKQNQSEEIISSEVDILKQKVKSLNKELQETNDKLNEAKQLKNSLQEKCILLDK
RLQENAVDLEEKQNLRYTIKKLELQVESMESEIKLERNKTEAEKNQLAILQVAYDKLNSE
YQETRIRESEKVSKVEFNDLVEKLDACEKALAKKQFEIDEIRQMDAKHKEDIETIGLLRA
QIDVYCADFHAERSARENIHQEKEQLEARLAYMIQESEKLKAEMMGRQSIEQLQRRHSCR
LENVSGGPYLVPRGAENMGQPSITVYTCPKCNLTVPDIDTLQIHVMDCIT
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggagaatggattgttaaaacatcctcatgttattaacatggaaaatggacatcaggat
gcctcatgtgatgtttttagcatgaagaatgatgcagaaatgttggaacagataaaacag
cttctaatggaaaataataatctaaaagaaaccatgaagcaaatgaatcaagagatgaaa
gaacgccttgaagagctcctgaagagacacaatcagcatttgctagacttgaacagcgaa
aatgaattgttgaggaaggaattaaacagtttaagagaaaaaaatgccacatctaatcaa
ggtataccagtttgctctaacccagaggagacaagtgaaagcaaacagctgaagactcag
ttaatgcgtttacaggcagagaaagctgacctgcttggtctaatatcagagttgcagctg
aaactcagcggtttttctgaagactcatttgtggaaatcagaatttctgaaaaggagtct
ggagaaataatacatgaagaaaaagcaaataaaacactaccagactatgatgtgtcatat
agcaggacaaactctgtcaaggaagaagggagtggcactgaaccagaagaggtggctatc
agcaggctccttcgcagtctgagagaggaaactcaaaaagtggagagactagagaaggaa
ttaagtgaacataaaaggttggcagaactaaaagaaaaaacctccagattctgtgacaag
gacatgcaaacagagcaggaaaaacagaatcagtctgaagagattatttccagtgaagta
gatatattaaagcagaaagtgaagtcactgaataaagagcttcaggaaaccaatgataag
ttaaacgaggctaaacagttaaagaacagtctgcaagagaagtgcattttactagataag
agacttcaagaaaacgcggttgatttggaggaaaagcaaaatcttagatatactataaag
aaattagaactccaagtggagagcatggagtctgaaatcaaactagaaagaaacaaaaca
gaagctgaaaaaaatcaactagccatcttgcaggttgcatatgacaaactaaactcagaa
tatcaggaaacaaggatacgcgagagtgaaaaagtttccaaagttgagtttaacgatctg
gttgaaaagctggatgcatgtgaaaaggcactggcgaaaaaacaatttgaaattgatgaa
attagacaaatggacgcaaaacacaaggaggatatagaaacaattggtctgcttcgtgct
cagattgacgtctattgtgcagatttccatgccgaaagatcagctagagagaacattcat
caagagaaggagcagttagaagctcgtctggcatatatgatacaagaaagtgaaaaactt
aaggcagaaatgatggggaggcagtcaatagaacagctccagaggcgccatagttgcaga
ttagagaatgtcagcgggggtccttatcttgtgccaagaggagcagaaaacatgggacag
ccaagtattactgtgtatacatgcccaaaatgtaacctgactgttccagatatagatacg
ctgcagattcatgtcatggactgtatcacctaa
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