Xenopus tropicalis (tropical clawed frog): 100145055
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Entry
100145055 CDS
T01011
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100145055 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100145055 (nup98)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100145055 (nup98)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100145055 (nup98)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100145055 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
100145055
NCBI-ProteinID:
NP_001265682
Xenbase:
XB-GENE-6450416
UniProt:
J7I6Y1
Structure
PDB
PDBj
LinkDB
All DBs
Position
2:complement(177430968..177466279)
Genome browser
AA seq
1790 aa
AA seq
DB search
MFNKTFGSPFGTGNGAFGATSTFGQTTGFGTTPATAFGSAGFGTNTSTGGLFGNTQTKPG
GLFGSTTFNQPATSSSSSGFGFGASTGTTNSLFGSTNTGSGLFATQSNAFGQAKPTTFGN
FGTSTSTGGLFGNTNTANPFGGTSASLFGASTFSAAPTGTTIKFNPPSGTDTMAKGGVTT
NISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNPVGAPTGTGLFGTSAATSSASTG
IFGSTAANNSFSFAGNKTTFGTAGTGAFGGNTGGLFGQPANQPAASLFNKPFGNATTTQS
TGFSFGNTSTLGQPQTSTMGLFGANQPTQSGGLFGTTTNTNATGAFGAGTSLFGQPNPAP
FGTGSTLFGNKPAGFGTTTTSAPAFGTTTGGLFGNKPTLTLGTNTNTSNFGFGSNTAGTS
LFGNKTATGTIGPSLGTGFGTALNPGQTSLFGSNQPKLTGTLGTGAFGNAGFNSTSAGLG
FGAPQAPVAALSDPGASAAHQMFLQQQYNALRYSPFPDSPLFRNPISDPKKKEELLKPTN
PAAQKAVLTPTHYKLTPRPAARVRPKALQNSGAAKSQLFDALDDDEPVLSSGVFMPKKSI
KKLDLKYLKNSSSLFGQENRDVDDMVPPTPEAPERSVENHHGDEENDEEAATTYPSPFSR
PLPQSQEKKQVNHMDDTIVALNMRKSGRIGLEHSSEDASFNEDSFRETEILDASPHPAGI
ILTRDSYYTIPSMEELARSVDENGECIVNGFTIGREGFGSIYFEGIVNLTNLDLDSIVHI
RRKEVIVYVDDQNKPPLGEGLNRPAQVTLDEVWPIDKTSRCMITSPERLSEMNYKSKLEN
ASRKQGAQFVDYRPESGSWVFKVNHFSKYGLQDSDEEDDQLNSAEAKKLKTAPVPPQGKQ
PPLQQATLPGKVTPPPQSPAVDQLDRVMELDSDMADITQDQDLDSVAEEQDISEEQEPLS
ASSHIASSLGINPHALQVMKASLLLEEEDGEIMSRFSSFPSSMDPYPDVRSPRLFPSSHA
KRPSSIGLLQSKFSAPSMSRLSETVQGSHSPKIHPAAPWSVPAPLAPSFIMPGPAPDTHL
RTVGTRRQQELVPLEKSVTHGRGTLMIDMGLFMGRSFRVGWGPNWTLVHNGDKLSERLNA
EEDRDMDTIDYGFLPKPTSAKSLTESPFKVHVEKLSLEQKTKDLQSYLLPLEIELKNSTV
DKSGPCPHFRPNPGVTAIHDYAGWVRNFSSEAAEVEAVVKQWGLTWTLCESLWGQLKELE
ASLDEPNEYVKNLERRKAFSHWLAQTAQERIEEEVSLYGPERHIEAVFSYLTGGRISDAC
RLAQKSGDHRLSLLLSQMVGSQEVRDLITLQLVDWNKLQVDHYIQEERLRVFCLLSGTPV
WRSSDNRSINVCSQLDWKRTLGIHLWYMLPPTATVAQALHMYEQAFQEQEGGEPYACYPL
PPYLEDCGFSFGDDPSAKFCSLQRDVCVHLLKLYSERQYDLCQLLDPSSATPDPLDYRLS
WHMWMVLQALNYTHLSGHRQGMLHASYAAQLENVGLWEWAIFVLLHIQDPHVREAAVREL
LNRHCVVHDSPESLAKENFLIQRLCLPAQWIHKAKAVRSRRDGDKHKEALYLLKSHQWNQ
CHKLVTRHLAADAVINENYRYLRGFLGELARPEHCKHIQDWETAGKVYLDYISVIEMLNQ
IRQDECSGGELEKLHTKVMSLCKWVELIQCYSAKGRLAQSEMAKRVANILRVVLSLQQPP
ESMSDSSSEPRVPLRLLAPHIGRLPMPEDYALEELRGLTQSYLRELICGS
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaaacatttggaagccccttcggaacgggcaatggtgcctttggcgctact
tcgacttttggacagacaactggctttggtaccactcctgccacagcatttggctctgcg
ggttttggcacaaacacaagtaccgggggcctgtttggaaacacacagaccaagccaggt
ggcttatttgggtccactacatttaaccagccagcaacctcctcctcaagctccggcttt
ggctttggggcctcaactggtactacaaacagtttattcgggtctacgaacacaggcagc
ggcctattcgccactcagagcaatgcctttggacaggccaagccgacaacctttggaaat
tttggaacaagcaccagcacagggggcctcttcggcaacacgaacacagcaaatccattc
ggtgggacctctgcatctctctttggggcgtcaacattctctgctgctccaacaggaacc
acaattaagtttaatcccccatctggcacggataccatggcgaaaggaggagtcaccact
aacatcagcaccaagcaccagtgtattactgccatgaaggagtatgagagcaagtcgctg
gaggaactccgccttgaggattaccaggcaaataggaagggcccccagaatcccgttggt
gcacccacaggaacgggcttatttggcacctcagcagcaacttcgagcgcttcaacgggt
atctttgggtctactgcagcaaacaacagcttctccttcgctggaaataaaactaccttt
ggtacagcaggcacaggcgcatttggtgggaatactggaggtctgtttggccagcctgct
aaccaacccgctgccagcctgtttaacaagccctttgggaatgcaacgaccacccaaagt
acaggcttctcatttgggaacaccagtacacttggccaaccacagacaagcactatgggg
ctctttggagcaaaccaacccacgcagtcaggtggtctctttggaacaacaaccaataca
aatgccaccggtgcatttggagctggaactagcctgtttgggcagcctaatcctgcaccc
tttggcaccggctcgaccctgtttggtaacaaacctgctggtttcgggacgaccacgacc
agtgcccctgcatttggcactacgactggcgggctctttggtaacaaaccaaccctgact
ttaggaaccaatacaaacacttccaattttgggtttggttcaaacacagcaggaaccagc
ctgtttggcaataagacagcaacgggaaccatcgggccgagccttgggacgggctttgga
acagcgctaaaccccgggcagacatctttgtttgggagcaaccagccgaagctgactggt
acacttggtacgggagcgttcggcaatgccgggtttaacagtacctcagcaggcctggga
tttggagcgcctcaggccccagtcgcagccctgtctgatcccggtgcttcagcggcacat
cagatgttcctacagcagcaatacaacgcgcttagatattccccgttccctgactcccct
ctcttcaggaaccccatctccgatccaaagaagaaagaggagctcttgaaacccaccaac
cctgctgcccagaaagccgtactgacccccacgcactacaagcttacccctcgcccagcg
gcgcgagtacgacccaaagcattgcagaacagtggggcagccaaaagtcagctcttcgat
gccttggatgatgatgagccggtcctgtctagtggggtgttcatgcccaagaaaagtata
aagaagctggacttgaagtaccttaagaacagcagcagcctatttggccaagaaaacaga
gatgtagacgacatggtgccgccgactcctgaagctccggaaagatctgttgagaaccac
cacggcgatgaagaaaacgacgaagaggctgccaccacatacccgtctcccttctccagg
cccctcccacaaagccaggagaaaaagcaggtgaaccacatggacgacaccatcgtagca
ctgaatatgcgcaagtctgggagaatcggcctggagcacagcagcgaggatgcctcattt
aatgaggattcatttagagagacagaaattctcgatgcttctccccaccctgcaggaatt
atcctaacgagggacagctattacaccatcccatccatggaggaactggccagaagtgtg
gatgagaatggggaatgtatagtcaatggtttcactattgggcgtgaaggtttcggatcc
atatactttgaggggatcgttaatctgaccaatttagatcttgattcgattgttcacatc
cgcaggaaggaggttattgtctacgttgatgatcagaacaagcccccccttggcgaaggt
ttgaacaggccggcccaagtgaccctagatgaagtctggccgattgataagacctcgcgt
tgcatgattaccagccccgagcgcctgagtgagatgaactacaagtccaagttagagaac
gcctctcgtaagcagggggcgcagtttgtggattatcgccccgagagcggttcctgggtg
ttcaaggtgaatcacttctctaagtatggcttgcaagactccgacgaggaagacgatcag
ctcaacagcgcagaagcaaagaagctgaaaactgcccccgtcccccctcagggcaaacag
cctcctctccaacaagcaactctccctggaaaagtcacccctccaccccagagcccagcg
gtagatcaactggatcgggtgatggagctggacagcgacatggccgacattacccaggac
caggatctggattctgttgcggaggagcaggatataagcgaagagcaggaaccattatct
gcctcctcacacattgcttcttccctgggcattaatccccacgccttacaggtgatgaaa
gcgtctctgcttctggaggaggaggatggggaaataatgagccgcttcagcagcttccct
tccagtatggacccgtaccccgatgtccgctcaccccgactcttcccatcatcccatgcc
aagaggccttcctctattggactgctgcagtctaagttttctgccccctccatgtcgcgg
ttgagcgagactgttcaaggctcccacagccccaaaatccaccctgcggcgccttggtct
gtcccggcacccctagctccctcctttattatgcccggcccggcccctgacactcaccta
aggacagtggggacccggaggcaacaggaactggtgccactagagaagtctgttacccac
ggccgcggcactctaatgatcgacatggggttgttcatggggaggtcgtttcgcgtcgga
tggggtcccaattggacccttgttcataatggggataagctaagcgagcggttgaacgca
gaagaagaccgggacatggataccatagattatggcttcctgcctaagcccacctctgct
aaatctctcacagagtcgccctttaaagttcacgtggagaagctgagcctggagcagaag
accaaagacctgcagtcctacttgctgccgctggagatagagctgaagaacagcaccgtg
gacaaatccggcccatgcccccacttcaggcccaacccaggagtcactgccattcacgac
tatgccggctgggtcaggaacttctccagtgaagccgcagaggttgaagcggtggtgaaa
cagtggggcttgacatggaccttgtgtgagtccctgtggggccaactgaaggagctggag
gccagtctcgatgagccaaacgagtacgtgaagaaccttgagaggcggaaggctttctcc
cactggctggcacagacggcccaggagcggatagaggaagaggtgtctctgtacggccca
gagcggcacatcgaagcggtgtttagctaccttaccgggggcaggatcagcgacgcgtgc
cgcctggcacagaaatctggggatcacaggctgtccctcctgctctctcagatggtgggc
agccaggaagtgcgggatctcataaccctacagttggtcgactggaacaagctgcaggtg
gatcactacatccaagaagagcggttgcgcgtgttctgcctgctctcgggcaccccggtg
tggcgctcttcagataacagaagcatcaatgtctgctctcagttggactggaagcgaacg
ctgggcattcatctgtggtacatgctcccacccaccgccaccgtggcacaggccttacac
atgtacgagcaggcctttcaggaacaggagggcggggagccttacgcctgctaccctctg
cccccctatttggaagactgcggcttcagctttggggatgacccttctgctaaattctgc
tccctgcaaagagacgtctgtgtccatttgctgaaactgtacagtgagaggcagtatgat
ctttgccagctgctagaccccagcagtgccacccccgaccccctggactacaggctcagc
tggcacatgtggatggtcctgcaggctctgaattatacccatctgtctgggcatcgccag
gggatgctgcacgccagttatgctgcccagctggagaatgtggggctctgggaatgggcc
atattcgtactgctgcacatccaggatccgcacgtccgtgaagcagccgtccgggagttg
ctgaataggcactgcgttgtgcacgacagccccgagtccctggccaaagagaacttccta
attcagagactctgcctcccagcacaatggatccacaaagcgaaagcggtccgctcccgg
cgggatggggacaagcataaagaggccttgtatttactcaagagccaccagtggaaccag
tgccacaaactggtgacccgccacttggccgcagatgccgttatcaatgagaactaccgg
tacctgcgggggttcctgggggagctggccaggcccgagcactgcaagcacatccaggac
tgggagactgcggggaaggtctatctggattatatcagtgtcattgagatgctcaaccag
atccgccaggacgagtgctccggcggcgagttggagaagttacacaccaaagtcatgtct
ctgtgtaaatgggtcgagctgatccagtgctacagtgccaaaggccgattggcccagtcg
gaaatggcgaaacgcgttgccaacatccttcgagtggtgctgagcctgcagcagcccccg
gaatccatgtcggactcctcctctgagccccgcgtgcctttgagactgctggctccgcac
atcgggcgcctccctatgccggaagactacgccctggaggagctgcgaggcctcacgcag
tcgtatctaagggaactgatctgcggcagctaa
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