Xenopus tropicalis (tropical clawed frog): 100145098
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Entry
100145098 CDS
T01011
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100145098 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100145098 (snrnp200)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100145098 (snrnp200)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100145098 (snrnp200)
Complex C
U5 SnRNP specific factors
100145098 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
100145098
NCBI-ProteinID:
XP_002932581
Xenbase:
XB-GENE-981975
UniProt:
A0A8J0QI16
LinkDB
All DBs
Position
3:complement(125076355..125103386)
Genome browser
AA seq
2135 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQKTK
PQMQEERRLKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDRLRDKDRRREVDQLLGQTDDTRYHVLVNLGKKIS
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMDGDEAVVRCTL
SANLASSGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMIMYCTLLASAQSEAEKERIMGKMESDPELSKYL
YQLQETEKEDLIREARGHRDKVRQLNVDMDLENMETEQGEAFAPRQVLDLEDLVFAQGSH
FMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFASDEQLVPVEKLPKYAQSGFEGFKTL
NRIQSKLFKAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIYI
APMRSLVQEMVGSFSKRLSTYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKGG
ERTYTQLVRLIILDEVHLLHDDRGPVLESLVARAIRNIEMTQEDVRLIGLSATLPNYEDV
ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDML
NAEVVLGHVQNAKDAVNWLGYTYLYIRMLRSPNLYGISHDDLKIDPLLEQRRLDLIHTAA
LLLDKNNLMKYDKKTGNFQVTELGRIASHFYITNDSIQTYNQLLKPTLSEIELFRVFSLS
SEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLDLSVHLQPITRSTLKVE
LTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLY
QDKFPFFNPIQTQVFNTIYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITP
MEALAEQVFMDWFEKFQDRLYKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGANGPVLEVICSRMRYISSQIERPIRVVALSSSLSNAKDVA
HWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIVKHSPKKPIIV
FVPSRKQTRLTAIDILTTCAADVQRQRFLHCTEKDLAPYLEKLSDETLKETLLNGVGYLH
EGLSSLERRIVEQLFNTGAVQVIVASRSLCWGLNIAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEHTLSDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYESIPIR
HHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFSSEHIKRCTEKGVES
VFDIMEMEDEDRTELLQLSDSQMADVARFCNRYPNIELSYEVAERDSIRSGGAVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGN
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaacagcccgaagcctgcagtatgaatacaaagcgaactctaaccttgta
cttcaagctgatcgctccctgatagaccgtacccgcagagatgagcccacaggagaggtt
ctctcgttggtggggaagttggaaggaactcgcatgggggacaaagctcaaaaaaccaag
ccacagatgcaggaagaaagacgacttaagagaagaaaacgagatgaagacaggcacgac
attaacaagatgaaaggatacaccctactgtctgaaggtatagatgaaatggttggaatc
atatacaagcctaaaaccaaggagacacgagaaacctatgaagtgcttctcagctttatc
caggctgcattaggagatcagccacgtgatatcctgtgtggagcagcagatgaagttctg
gcagtgctgaagaatgacagacttcgggataaagacagaaggagggaagtggatcaactg
ctagggcaaactgatgatactcggtaccacgtgctagtgaacctgggcaaaaagatttca
gactacggtggagacaaagaaattcaaaatatggatgacaatattgatgagacatatggg
gtgaatgtgcagtttgaatcagatgaggaggaaggagatgaggatatatatggagaggtg
cgagatgaggcatctgatgatgatatggacggtgatgaagctgttgtgcgttgtactctg
tctgctaatcttgcatcttccggagaattgatgagttccaaaaagaaagatcttcatccc
cgggacattgatgccttttggttgcaaaggcagctcagccgtttctatgatgatgctatt
gtgtcccagaaaaaagcagacgaagttctggaaatactaaagactgcaggagatgatcgt
gaatgtgaaaaccagctggttctcttgctggggttcaacacatttgacttcatcaaagta
ctgcggcaacatcgtatgatgattatgtattgcacactcttggccagtgctcagagtgaa
gcagagaaagaaaggattatgggcaaaatggagtccgatcctgaactctctaaatatcta
taccaattacaggagactgaaaaggaggacctgattcgggaggcacgtgggcacagagac
aaggttaggcagttaaacgtagacatggatttggagaacatggaaacagagcaaggagag
gctttcgctcctcgtcaagtattggacttggaggatttggtttttgcccagggtagtcat
ttcatggcaaacaaacgatgccaactgcctgatggctcctttagacgtcagcgaaaaggg
tatgaagaggtgcatgtgcctgcccttaaacccaaaccttttgcttctgatgagcaactg
gtcccagttgaaaagctacctaaatatgctcagtctggctttgaaggcttcaagactctg
aatagaatccagagcaaattgtttaaagctgcattggaaacggatgagaacctgttgctc
tgtgctcccaccggagctggtaaaacaaatgtagctctcatgtgcatgctccgggagatt
ggaaagcacataaatgtggatggcaccatcaatgtggacaacttcaaaataatctacatt
gctcccatgagatccctggtccaggaaatggtgggcagcttcagcaagcgtttgtcaaca
tatggcattaccgtggcagagttgacaggagatcaccagctatgtaaagaagaaattaac
gccacacagatcatagtttgtaccccagaaaaatgggatatcatcacccgtaaaggagga
gagagaacatacactcagcttgtccgtctgatcattctggatgaagtacacttgctgcac
gatgatagaggtccggtgttggagtctttggtcgctcgagcgattcgtaatattgagatg
acacaggaggatgtccggcttattggtctcagtgccactttgcctaattatgaggatgta
gccacatttcttcgtgtggatcctgccaaggggcttttttattttgacaacagttttcgt
ccggtgccactggaacagacctatgtaggcattacagagaaaaaggccatcaaacgtttc
cagatcatgaatgagatagtttatgagaaaatcatggagcatgccggaaagaaccaggtt
ctggtgtttgttcattctaggaaggaaacgggtaagacatcccgcgctattagagatatg
tgcctggagaaggacaccttgggtctgtttctgagagagggttctgcctctacagaagta
cttcgtactgaagccgagcaatgcaagaatctggaactgaaggatctcctgccctatggg
tttgctattcaccatgctggtatgagccgtgttgacaggacactagtggaggatctgttt
gctgataaacacattcaggtcctggtttccacagctactctggcttggggagtcaatctc
ccagctcacactgttatcattaaagggacacaggtttatagtccagaaaaaggtcgctgg
acagagctaggtgccttggatatcctgcagatgcttggtagggctggacggcctcagtat
gatacaaagggtgagggaattctcatcacatcacatggggagctgcaatattacctgtcc
ttgctgaaccagcagcttcctattgagagccagatggtggcaaaacttccagacatgttg
aatgcagaagtggtcctcggacatgtacagaatgctaaggatgctgttaactggttaggc
tacacatacctatacatccgtatgttgcggtctccaaacctgtatggaatctcccatgat
gatcttaaaattgaccctttgctagaacagagacgtcttgatctaatccatacagctgcc
cttctccttgacaagaacaacctgatgaaatatgataagaagactggtaattttcaggtt
actgagctgggtcgtattgccagtcatttttacatcaccaatgattcaatacagacgtac
aaccagctgttaaaaccaactctcagtgagatcgaacttttccgtgtgttctcgctctcc
tctgagttcaagaatatcactgtcagagaggaggaaaaactagaactgcagaagttgctt
gagagagtacctatccctgtcaaagaaagcatagaggagccaagtgctaagatcaatgtc
ctgctgcaggcattcatttctcagctgaaactggaaggatttgctctaatggcagacatg
gtgtatgttacacagtctgcaggccgtctcatgcgagctatatttgaaattgtccttaac
cgagggtgggcccagctaactgataaaactctcaatctgtgcaaaatgatcgacaagagg
atgtggcagtccatgtgtcctttacgccagttcaggaagttgccagaggaagtggtaaag
aagattgaaaagaagaactttccttttgagcgtctttatgatttgaatcacaatgagatt
ggtgaactcatccgtatgcccaaaatggggaagacaatccataagtatgttcacctcttt
cccaagctggatttgtcagtgcacctgcagcctatcacccggtctaccctgaaagtagag
ctcacgattactccagattttcagtgggatgagaaggttcatggttcctccgaagctttc
tggatcctagtagaagacgtggatagtgaagtaatcctgcaccatgagtactttctgctg
aaggccaaatacgcacaagatgagcatcttgttacattctttgtaccagtctttgagcca
cttccacctcagtattttatccgagtggtgtctgaccgttggctctcttgtgaaactcaa
ctcccagtctctttccgccatctgattcttcccgaaaaatacccaccgcctactgagctg
ctggatctacaaccactgccagtttctgcccttaggaacagtgcatttgagagcttatac
caggataaatttcctttctttaaccctatccagacccaagttttcaacacaatatacaac
agtgatgataatgtctttgtgggagctcccacaggaagcgggaaaaccatttgtgcagaa
tttgccatactcagaatgctgcttcagaattccgagggccgctgtgtttatataactcct
atggaagctctggccgaacaggttttcatggactggtttgaaaagttccaggacaggtta
tataagaaggttgtcctgctcactggtgagaccagcactgatctgaagcttttgggtaag
gggaacattattatcagcaccccagaaaagtgggatatcttgtcccgtcgatggaagcag
aggaagaatgtgcagaatgtcagtctattcattgtagatgaaactcacctcatcggggga
gccaatggaccagttcttgaggtaatttgttccagaatgcggtacatctcctcccagata
gagaggcctatccgtgtcgtggccctaagctcctctctctccaatgccaaggatgttgct
cactggctgggttgcagtgccacctccacattcaactttcatcccaacgtgaggcctgtt
cctctggagttacatatacagggctttaacatcagtcatacacaaacgcggctgctttct
atggctaagccagtttaccatgccatcgtaaagcactcgccaaagaaacccatcattgtt
tttgtgccgtcccggaagcagacacgtctcactgctattgatattcttactacctgtgca
gcggatgtgcagcgacaaaggttcctgcactgcacagagaaggatttggctccttacttg
gaaaagttgagtgatgaaactctaaaggaaaccttgttgaatggggtgggctacctgcac
gagggcctttcatcactggagagacggattgtggaacagttattcaacactggagcggta
caggtgattgtggcctctcgcagtctttgctggggacttaacattgctgcacatctggtg
attatcatggacacacagtactacaatggcaagattcatgcgtatgttgattatcccatc
tatgatgtcctgcaaatggtgggatatgccaaccggcccttgcaggatgatgaagggcgc
tgtgttattatgtgccaaggatcaaagaaggatttctttaaaaagttcctgtatgagcct
ttgcctgtagaatctcacttggatcactgcctgcacgaccacttcaatgcagaaattgtc
accaagacagttgagaacaaacaggatgctgtggattatctgacttggactttcctgtac
agacgcatgacccaaaaccccaactactacaaccttcagggtgtttctcacaggcacctc
tcggatcacctttcggagctggttgaacacacgctgagtgatcttgagcagtcaaaatgc
atcagcattgaagatgaaatggacgtggctcctctgaacctgggaatgattgctgcttat
tactacatcaactacaccaccattgaactcttcagcatgtccctgaatgccaagaccaag
gtgcggggtcttatagaaataatctctaatgcagcagaatacgaaagcatacccattcgt
caccacgaagacaatctgcttcgccagcttgcacagaaagtaccccacaaactcaccaac
cccaaattcaatgatcctcatgtgaagaccaacttgctgcttcaggctcatctctcccga
atgcagctgagtgcagagctccagtcagatactgaggagatcctcagtaaggcaatccgg
cttatccaggcctgtgtggatgtgctttccagtaatggctggttaagcccagctcttgcc
gccatggaacttgcccagatggttacccaggctatgtggtccaaggactcctatctgaag
caactgcctcacttcagctctgagcacatcaagcgatgcacagagaagggagtggagagt
gtattcgatattatggagatggaggatgaagaccgtacagagttactgcagctttcagac
tcccagatggcagacgtggcaagattctgtaaccgctaccccaacatagaactctcctac
gaagtggcagagagagattccatcagaagtggtggcgctgtggtggttctggtgcagttg
gagcgtgaggaggaagttacaggacctgttatcgctccactcttcccacagaaacgtgag
gaaggctggtgggttgtgattggtgattccaagtccaacagtctgatttcaatcaagaga
ctgaccctgcagcagaaagccaaggtaaagctggattttgttgcccctgctactggaaac
cacaactacactctgtatttcatgagcgacgcctacatgggctgtgaccaggagtacaag
ttcagtgttgacgtgaaggaggcagagagtgacagtgactctgattag
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integrated database retrieval system
