Xenopus tropicalis (tropical clawed frog): 100145120
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Entry
100145120 CDS
T01011
Symbol
sptbn1
Name
(RefSeq) spectrin, beta, non-erythrocytic 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04517
IgSF CAM signaling
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
100145120 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100145120 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xtr04812
]
100145120 (sptbn1)
Cytoskeleton proteins [BR:
xtr04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
100145120 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
100145120 (sptbn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
UNC83_N
PH_11
Motif
Other DBs
NCBI-GeneID:
100145120
NCBI-ProteinID:
NP_001362280
Xenbase:
XB-GENE-989148
UniProt:
A0A8J0QFZ2
LinkDB
All DBs
Position
5:24008003..24127541
Genome browser
AA seq
2358 aa
AA seq
DB search
MTAVATDFDNIEIQQQYSDVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKKTFTK
WVNSHLARVSCRITDLYADLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQF
LKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLW
CQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAE
QHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIETEK
MIEKYESLASDLLEWIEQTIIILNNRKFANSLIGVQQQLQAFNTYRTVEKPPKFTEKGNL
EVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLEQ
LARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVLAVV
AVARELEAENYHDIKRITARKDNVIRLWEYLLELLKARRLRLEMNLGLQKVFQEMLYIMD
WMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVRAVNASAQRFATGGEGYK
PCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILS
SDDYGKDLTSVVRLYCKHKAFEDEMSGRSGHLLQTIKEGEEMIAEDHFGSEKIRERIKDI
QEQWANLEHLSAIRKKRLEDTTSSYQFQADADDVDAWMLDILRIVSSSDVGHDEYSTQSL
VKKHKDVAEEIANYRSTIDALHEQAAALPEERFNSTDVQNRLSGIEERYKELAELARLRK
QALQDALTLYKMFSEADACELWIVEKEQWLNNMQIPEKLEDLEVIQHRFESLEPEMNNQA
SRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFRELVDKTKDALSSALSIQNYHL
ECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEAKLTDLQKEAEKL
EAEHPDQAQAIMDRLAEINNVWEEMKTTLKNREESLGEASKLQQFLRDLDDFQSWLSRTQ
TAIASEDMPNTLAEAEKLLTQHENIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFLRQ
RLQALDTGWNELHKMWENRQSLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTELPNNLE
AAEAAIKTQEDFMTTMDASEEKINAVVDTGRRLVNDENINSDKIEEKVDSIDSRHKKNRA
GANDLLMRLKDNREMQKFLQDCQELSLWINEKMLTARDMSYDEARNLHSKWLKHQAFMAE
LASNKEWLDKIEKEGNQLIAEKPETEAIVKEKMSALHAMWEELESTTQTKAQRLFDANKA
ELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMDVRKKEVEELRSQ
AQALSQEGKSTDEVDGQRQVVEVRFIELLAPLNERKKYLLASKEIHQFNRDVEDEILWVE
ERMPLATSTDHGHNLQTVQLLMKKNQTLQKEIQGHQHRNDDIFERSKMILDDSSLNAEAI
TQRLADLQALWSLLIEETEKRHRRLEESHRAQQYYFDGAEAEAWMSEQELYMMSEEKAKD
EQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVAEGHPESERISMRQSQVDKLYAGL
KDLSEERRGKLDERQRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREF
ARDTGHIGQERVDSVNHMADDLINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAA
SFELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQL
QEDAARLQAAYAGDKADDIQKRESEVLEAWKALLDACDGRRLRLVDTGDKFRFFSMVRDL
MLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHY
ASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLFGQEPYLSSR
EIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRLQEEEERKRKPPTP
ELSPKLSEDGSPQQWDGTKEGEQISQNGLPSDQESPRMAENADTNELVNGSTEQRSSSKE
SSPIPSPTADRKSKSGMQPQTAATLPAKTQEMPSAQFEGFLHRKHEWEGHNKKASSRSWH
NVYCVINNQEMGFYKDSKNAASGIAYHNEIPANLKEAVCEVATDYKKKKHVFKLKLNDGN
EYLFQAKDDEEMNTWIQAITNAITSDKTEVSLSTQSTPASSRAQTLPASVTVTDSPGKRE
KDKEKDKEKRFSLFGKKK
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgacagcggtcgcgacagacttcgacaacattgagatacaacagcaatacagcgatgtc
aacaatcgctgggatgatgagtgggacaatgagaacagttctgcccgcctgtttgagagg
tcccgcatcaaggccttagcagatgaacgtgaagctgtgcagaagaagactttcacaaaa
tgggttaattcccacttggccagggtgtcgtgccgcattactgatctctacgcagacctt
cgagatgggaggatgcttatcaaactactggaggttctctccggagaaagactccccaaa
cccaccaaggggagaatgcgcatccactgcctggaaaacgttgataaagctctccagttc
ctaaaggaacagcgggtgcatctggagaacatgggctcccatgacatcgtggatggaaat
cacaggctgacccttggtcttatttggaccattattctccgattccagatccaagatatt
agtgttgaaactgaggacaacaaggagaagaaatctgctaaggacgcgctgcttctgtgg
tgccagatgaagacagctggctatcctaatgtgaacatccataactttacaaccagttgg
agggacggcatggcattcaatgcacttattcacaaacacaggcctgatctaattgatttt
gataagctgaagaaatcaaacgcacactacaatcttcaaaatgcttttaacctggcagag
cagcaccttggccttacaaagctcctggaccctgaggatatcagtgtggaccatcctgat
gaaaagtccatcattacctatgttgtaacatactaccactacttctctaaaatgaaggct
cttgctgtggaaggcaaacgtattggaaaagtgcttgacaacgcaatcgaaaccgagaaa
atgattgagaaatacgaatctctggcctccgatcttctggagtggatcgagcagaccatc
atcatcctgaacaatcggaagtttgccaattctttaattggtgtacagcagcaattacag
gcattcaatacttaccgcactgtggagaaaccccccaaatttacagagaaaggaaattta
gaggtcttgcttttcactatccagagtaaaatgagggcgaataaccagaaagtgtacatg
ccaagggagggcaaactcatctcagatattaacaaggcctgggaaagactggaaaaagct
gaacacgagagagaactggcactgcgcaatgagctcatccgacaggagaaactggaacaa
ctcgcacgtcgatttgatcgcaaggcagctatgagggaaacctggctaagcgaaaaccag
cgtttggtgtctcaggataattttggttttgacctccccgctgtggaagcagccacaaaa
aagcacgaggccattgaaaccgacattgctgcctatgaagagcgcgttttggctgtggtg
gcggtcgctagggaactggaagccgaaaactaccatgatatcaaacgtatcaccgccaga
aaggataatgtcattcgcctgtgggagtatctgcttgagcttctcaaggcacgacgactg
cgccttgaaatgaacctcggcttacaaaaggttttccaagaaatgctttacataatggac
tggatggatgaaatgaaggtgctgttattgtctcaagattacgggaagcatctgctgggg
gttgaggacctgttgcagaaacatgccttggtggaggctgacattgccattcaagctgat
agggtcagagctgtcaatgcttctgcccagagatttgccactggaggagaaggttataaa
ccatgtgaccctcaagttattcgggatcgcgtggcccatatggagttttgttatcaagag
ttgtgtcagctggctgcagagaggcgggctcgtcttgaggagtccaggcgcctctggaag
tttttctgggaaatggctgaagaagagggctggattcgtgagaaggaacagattctgtcc
tctgatgactatggaaaggatttgacaagtgttgtacgtctgtattgcaagcacaaagca
tttgaggatgagatgagtggtcgaagtggacacctacttcagacaattaaagagggagag
gagatgattgccgaagaccatttcggttctgagaaaatacgagagagaattaaggatatt
caagagcagtgggcaaacctggagcacttgtctgcaataagaaagaaacgtctggaagat
accaccagttcctatcagttccaggcggatgctgatgacgttgatgcatggatgttagac
atcctgaggattgtatctagtagtgatgttggacacgatgagtattctacccagtcctta
gttaaaaagcacaaggatgttgctgaagaaattgcaaattaccgatcaaccattgatgct
ctccatgagcaggctgctgccctccccgaggagcgattcaattctacagatgtgcagaac
agattgtctggaatagaagagagatataaggaattggctgagctggctaggcttcgaaaa
caagctctgcaagatgccctgacactctacaaaatgttcagtgaagctgatgcctgtgag
ctctggattgtcgagaaggagcaatggctaaacaacatgcaaatccctgaaaaactagaa
gaccttgaagttattcagcacagatttgaaagcctggagccagaaatgaacaaccaagct
tctcgagtggctgtggtcaaccaaattgctcgccagcttatccacagtggtcacccaagt
gaaaaggaaatcaaagcacagcaggataaactgaacaccaggtggagtcagtttagagag
ctggttgacaaaacaaaggatgcactcagttcagcactcagcatccagaactatcatctc
gagtgcaatgagacaaagtcctggattagagaaaagaccaaagtaattgagtccacacaa
gagctcggcaatgacctggccggagttatggctctgcagaggaaactaactggtatggaa
cgtgatctggccgccattgaagctaaactgactgatctacagaaagaggcagaaaaactg
gaagctgagcatcctgaccaagctcaggctatcatggacagacttgctgaaattaacaat
gtgtgggaagaaatgaaaacaacattaaagaatcgggaagagtctcttggtgaggccagc
aagctgcagcagttcttgcgtgacttagatgactttcagtcttggctgtccaggacccaa
accgctatcgcatccgaggacatgccaaacacgctagcagaggctgaaaagcttctcact
cagcatgaaaacatcaagaatgaaatcaacaactatgaggaagactaccagaagatgagg
gacatgggcgaaatggtgacacaggggcaaacggatgcacaatacatgttcttgcggcag
cgccttcaggctcttgacactggatggaatgagcttcacaagatgtgggagaacagacag
agcctcctatctcagtctcacgcttatcagcttttcctaagagatacaaagcaagctgaa
gcttttctcaataaccaggaatatgtcttggcacatacagaactgcccaataacttggaa
gctgcagaggcggctataaagacgcaggaagacttcatgactactatggatgctagcgag
gagaagatcaatgcagtggtggacactggaagaaggctggtcaatgatgaaaacattaat
tctgataagattgaagaaaaggtggattcaatagatagcagacacaagaaaaatcgtgca
ggagcaaatgatctattaatgcgcctgaaagacaacagggagatgcagaagttccttcag
gactgtcaagagctgtccctgtggattaatgagaagatgctcacggctcgtgacatgtcc
tacgatgaggccaggaacctgcacagtaagtggctgaaacaccaggctttcatggctgaa
ttggcatcaaataaggagtggctggacaaaatagaaaaggagggaaatcagctcattgca
gagaaaccagaaacagaagctattgtaaaagagaagatgagcgctctgcatgcaatgtgg
gaagagcttgaatccaccacccagaccaaagcgcagcggctttttgatgccaacaaagct
gagctttttacccagagctgtgccgacctggataagtggctgcacggcctggagagtcag
attcagtcggatgattatggaaaagatctgaccagcgtgaacattctcttgaagaaacaa
cagatgctggagaaccagatggatgtgcgcaagaaggaggtagaggagctgcggagccaa
gcacaggcgctgagccaggaggggaagagtacggatgaagtggatggccaacggcaggtt
gtggaagtgaggtttatagaactgctcgcacccttgaatgaaaggaaaaagtacctgctg
gcttccaaggagattcaccagtttaaccgggatgtggaagacgaaattctttgggttgaa
gagaggatgccacttgccacatccacagaccacgggcacaatctccagaccgtacagctg
ctgatgaagaaaaaccagactcttcagaaggagatccagggccaccagcatcgtaatgac
gacatatttgagaggagcaagatgatcctggacgatagcagccttaacgcagaggcaatc
acacaaaggttggcagacctgcaggcactgtggagtctcttgatcgaagagacagaaaag
cggcacaggaggctggaggagtcgcacagggcacagcagtactacttcgatggggcagag
gcagaagcgtggatgagtgagcaagagctgtatatgatgtcggaggagaaggccaaggat
gagcagagcgctgtgtctatgttgaaaaagcaccagattttggagcaagcggtggaggat
tatgccgagactgtgcaccagctttccaaaaccagcagggcattggtggcagaaggtcac
ccagagagcgagcgcatcagcatgcgtcagtctcaggttgataaactttatgccggccta
aaagatctgtcggaagagaggagaggcaaactggatgagaggcaacggctgttccagctc
aatcgggaagttgatgacttggagcagtggatcgctgagagagaggtggtagcgggatct
cacgagcttggccaagactatgaacatgtaacgatgttacaagagcgatttagagagttt
gcccgggacaccggccatattggacaggaaagagtagactccgtcaaccacatggcagat
gatctcattaactctggacattctgatgcagccacaattgcagaatggaaagatggcctc
aacgaggcatgggctgaccttctggagctcattgacacaagaacacagatactggcagcc
tcttttgaactgcacaaattctaccacgatgctaaggagatctttggccgcatacaagat
aaacacaagaagctcccagaggagctgggcagagatcagaacacagtagagacgctacag
aggatgcatacaacgtttgaacatgatattcaggcactggggacacaggttaggcaactt
caggaagatgctgcccgactgcaggctgcttatgccggagacaaagccgatgatatccag
aagcgagagagtgaggtgctggaggcatggaaagcattactggatgcatgcgatgggcga
aggctgcgactggtcgacacaggggacaagttccgcttcttcagcatggtgcgtgatctc
atgttgtggatggaagatgtgatccgtcagatcgaggcccaagagaagccaagggatgtt
tcctcagtagaattactgatgaacaatcaccagggcatcaaggcagagatcgatgcccgc
aatgacagctttactacatgtattgagcttgggaagtctctcttggcaagaaagcactat
gcatctgaagagattaaggagaaactgctgcagctgactgagaagagaaaagaaatgatt
gacaagtgggaagatcgatgggaatggctgcgactaattctggaggtgcaccagttttcc
agagatgcaagcgttgcagaagcctggctgtttggacaagagccatacctgtcgagtcgg
gaaataggccagagcgtagacgaagtggaaaaactaattaagaggcacgaagcatttgag
aaatcggcagctacttgggatgaaaggttttctgctctggaaaggctcactacgttggaa
ctgttggaagttcgacggttgcaagaggaagaggagaggaaaaggaagccacctactccc
gaactgagtccaaagctttcagaggatgggtccccacaacaatgggatggaacaaaagag
ggagaacaaatatctcagaatggcttgccgtctgaccaagagtcgccacggatggctgag
aatgcagacaccaatgaactggttaatgggtccacagagcagagatcaagctccaaagaa
tccagtccaattccttcaccgactgctgatcggaaatccaaatccggcatgcagccacag
actgccgctaccctcccagccaagacgcaggaaatgccttccgcgcagtttgaaggtttc
ttgcaccgcaaacatgaatgggagggtcacaacaagaaagcttcaagcagatcttggcat
aatgtgtactgtgtgatcaacaaccaggaaatgggattttataaggattccaaaaatgct
gcatctggtattgcgtatcacaacgagattccagcgaatctgaaggaagcagtctgtgaa
gtcgcaactgattacaaaaagaagaaacatgtattcaaattaaagcttaacgatggcaat
gagtacctcttccaagccaaagatgatgaggagatgaacacatggattcaggccattaca
aacgcaattacgtcggataaaaccgaggtgtctctgagcacgcagagtaccccagcatcc
agccgtgcccagaccctcccggccagcgtaacggtaaccgacagccccggcaagcgggaa
aaggataaagaaaaggacaaggaaaagagattcagcctcttcggcaaaaagaagtga
DBGET
integrated database retrieval system
