Xenopus tropicalis (tropical clawed frog): 100145293
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Entry
100145293 CDS
T01011
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
100145293 (ddx55)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100145293 (ddx55)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
100145293 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
SHOCT
Motif
Other DBs
NCBI-GeneID:
100145293
NCBI-ProteinID:
NP_001120242
Xenbase:
XB-GENE-972462
UniProt:
B1H117
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Position
1:complement(160983479..160994462)
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AA seq
594 aa
AA seq
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MENVTEGTWDSLSHKLNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKT
LAFVIPLLEILLKREEKLKKNQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGG
SNPVDDVMKFKEHGGNIIVATPGRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMG
FEASINTILGFLPKQRRTGLFSATQTQELENLVRAGLRNPVRIAVKEKGVAATCTQKTPI
RLQNYYMICKADEKFNKLVAFLQQRKQEKHLVFFSTCACVEYYGKALEALLKNVKVMCIH
GKMKHKRNRIFTEFRKLNSGILVCTDVMARGIDIPEVNWVVQYDPPSSASAFVHRCGRTA
RIGHHGSALVFLLPMEESYVSFLSINQKCPLQEMTELISAVDLLPKLKSMAESDRAVFEK
GMKAFVSYVQAYAKHECNLIFRVKDLDFSNLARGFGLLRMPRMPELRGKNFSDFVSTTID
TDSIPYKDKNREKQRQKMLKERREKLESEGRRNFAKNKAWSKQKARKDKKKKVAQKRKQE
EGSDIDEDDVDELLHDTRLLKRLKKGKITEEEFEKQLTAAGEKSEDEDGSDNSD
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgttactgaagggacatgggatagtctatcccataaactaaatagcagtatc
agacagaccctgagtgagttaaagttcactcatatgactccggtgcagtcggcaacaatc
cccttgtttatgaacaacaaagatattgctgcagaagcgataactggaagtgggaaaaca
ctggcatttgtcattccacttttggaaattttgctgaaaagagaagaaaagctaaagaaa
aatcaggttggtgctataatcataaccccaacacgtgaacttgcagtgcagattgacgag
gtgctctcatacttcacaaagcattttccacaatttagccagattctccttattggggga
agtaaccctgtggatgatgtaatgaaatttaaagaacatggtggaaacattattgtggct
acaccgggacgactggaggatatgttccggagacaggctgatggactggatttagtcagc
tatgtgaaaacccttgatgttcttattttggatgaagcagatagacttttggatatggga
tttgaagcaagcataaataccatcttagggttcttgcccaaacagagaagaactggtctg
ttctcagcaacacaaactcaagagttagagaacctggtaagagctggacttaggaatcct
gtccgtatcgctgtgaaggagaagggagtagcagcaacctgtacacagaaaacaccgata
cgtctccagaattactatatgatctgcaaagcagatgaaaaattcaacaagttggtggct
ttcctgcagcaaaggaaacaagaaaagcacctggtattttttagtacgtgtgcctgcgtg
gaatattatggaaaagcattagaagcgcttttaaaaaatgtgaaagtgatgtgtattcat
ggaaaaatgaagcacaagcgcaacaggatttttacagagttcaggaaacttaacagtggt
atattagtttgtacagatgtgatggcacgcggtatagacattcctgaagtaaactgggtt
gtgcagtatgatcccccaagtagtgccagtgcctttgttcaccgatgtggacgtacagcc
cggattggtcatcacggcagtgcactcgtgtttctgcttcccatggaagaatcatatgtc
agttttctttcaataaaccaaaagtgcccactgcaagaaatgacagagctaataagtgct
gtggatcttcttcctaaattgaaatccatggcagagtctgatcgcgctgtgtttgagaag
gggatgaaagcattcgtgtcctatgtgcaagcttatgctaagcatgagtgcaacttaatc
ttcagggttaaagatttggatttctctaatctcgcccgaggatttggcctgctgagaatg
ccccggatgccagaattgagagggaagaatttctcagactttgtttccaccacaattgat
acagactccattccatacaaagataagaacagagaaaaacagaggcagaaaatgctgaaa
gagcgaagagaaaaactggagagtgaaggcaggagaaattttgcaaagaacaaggcatgg
tcaaaacagaaagccaggaaggacaagaaaaagaaagtagcgcagaaacggaaacaagaa
gagggatccgatatagacgaagatgatgtggatgaattgctccatgacactagattattg
aagagattgaaaaaggggaaaattactgaagaggagtttgagaagcagctgacagcagct
ggagaaaagagtgaagatgaagatggatctgacaactcagactga
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