Xenopus tropicalis (tropical clawed frog): 100145659
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Entry
100145659 CDS
T01011
Symbol
rapgef2
Name
(RefSeq) rap guanine nucleotide exchange factor 2
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
xtr04517
IgSF CAM signaling
xtr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100145659 (rapgef2)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
100145659 (rapgef2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100145659 (rapgef2)
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Ortholog
Paralog
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
cNMP_binding
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
100145659
NCBI-ProteinID:
NP_001120522
Xenbase:
XB-GENE-5814345
UniProt:
Q08BU0
LinkDB
All DBs
Position
1:complement(52646961..52815935)
Genome browser
AA seq
1645 aa
AA seq
DB search
MASYVDNSFRQAVMKPPADRSAQDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERHEA
NEVLYYPDDIGTCWYILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMDENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVESYPVGKPPLPRGYHTLPADF
TKLHITDSLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATESEPGDMDLSGLPETAVDS
EDDDDEEDIERASDPLMSRDIVRDCLEKDPIDRTDDDIEQLLEFMHQLPAFANMTMSVRR
ELCAVMVFAVVERAGTVVLNDGEELDSWSVILNGSVEVTYPDGRTEILCMGNSFGVSPTM
EKEYMKGVMRTKVDDCQFVCIAQQDYCRILNQVEKNMQKVEEEGEIVMVKEHRELDRTGT
RKGHIVIKGTSERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMEVGKKLLEWFNDPSL
RDKVTRVVLLWVNNHFNDFEGDPAMTRFLEEFENNLEREKMGGHLRLLNIACAAKAKRRL
ITLTKPSREAPLPFNLLGGSDKGFGIFVDSVDPGSKAAETGLKRGDQILEVNGQNFENIQ
LTKALEILRNNTHLSLTVKTNLFVFKELLARMLEEKRNSAPHLPKIGDIKKASRYSIPDL
AVDVEQVIGLEKVSKKGKANTVGGRNKLKKILDKTRISILPQKPYNDIGIGQSQDDSIVG
LRQTKHMPATLPVSGTLSSSNPDLLQSHHRILDFNTTPEQPDQVLRVFKADQQSRYIMIS
KDTTAKEVVIQAIREFALTAVPDAYSLCEVSVTPEGVIKQRRLPDQLSKLADRIQLSGRY
YLKNNMETETLCSDEDAQDLLRESQISLLQLSTIEVATQLSMRNFELFRNIEPTEYIDDL
FKLKMKTGCTNLKNFEEVINQETFWVASEILRETNQLKRMKIIKHFIKIALHCRECKNFN
SMFAIISGLNLAPVSRLRTTWEKLPSKYEKLFQDLQDLFDPSRNMAKYRNVLNSQNLQPP
IIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVGRMASVNMDPALMFRTRK
KKWRSLGSLSQGSTNATVLDVAQSGGHKKRVRRSSFLNAKKLYEDAQMARKVKQYLSDLD
LEMDEENLQTLSVQCEPATNTLPKNPCEKRAGKPDTSPVAPRAAAQHKQQQQQQTKVNQA
LQVPAVALYPSRKKVPVKDLPPFGINSPQALKKILSLSEEGSLERHKKQAEDTISNASSQ
LSSPPTSPQCSPRKGYTMAASGTVDNFSDSGHSEISSRSSIVSNSSFDCVHLHDDRRQRH
SLSIVETNLGVGRADRRAIIDADQCSLGSYAPVAETRGLYAGATVLSSPSMEELSQDQGD
RASLDAADSGRGSWTSCSSGSHDNIQTIPHQRSWETLPFGHVHFDNTADGSGFWATGGHM
DHGIFPDHSTKYGRYSQGREPLDQAQSRASWASSTGYWGEDSEGDTGTIKRRGGKDVALE
AETSSITSMTPEETKPLPVPTHVAVTASSAKGLIARKEGRYREPPPTPPGYVGIPIADFA
DGHPPLSRKPPDYNVALQRSRMMARRSESEGSAATSPPSHNQTSGRTANKPQWHKPNEAD
PRLALYQAQGVTEKDDADDEQVSAV
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctatgtggataacagtttcaggcaggctgtgatgaagcccccggctgacaga
agcgcacaggacctggagattgtttattcctaccttcatggaatggaagcactgtctaac
cttcgggaacatcagcttagactgatgtgtgaaactgtccgttacgaaaggcatgaagct
aatgaagtcttgtattaccctgacgacattggtacctgttggtatatccttttgtctggt
tctgtgttcatcaaagagtccatgtttcttccaaggagcagctttggcaaacgttctgct
ggaagcttaaggcgtggctgtgaatgcatcgtattggagccttccgaaatgattgtggtg
gactatatggatgaaaatgaagaatatttccagcgccaggcatctcaccggcagtctcgc
cggaggttccgcaagatcaatcagaaaggcgagaggcaaaccattattgatacagtggaa
tcctatcctgttggaaaaccacctttgccaagagggtatcatacgctccctgctgatttc
actaaactgcacatcacagacagtctacatccacaggtgacgcacgtgtcctctagtcat
tcaggatgtagcatcactagcgattctgggagcagcagcttgtctgacatctaccaggcc
acagaaagtgagccaggagatatggacctgagtgggctgccagagaccgctgtagactca
gaagatgacgatgatgaagaggatattgaaagagcttctgaccctttaatgagcagggac
attgtcagagactgtctggagaaggatccaattgacaggactgacgacgatattgaacaa
cttctggagttcatgcaccagttgccagcatttgccaacatgacaatgtctgtaagacga
gagctctgtgcagtcatggtgttcgctgtggtcgagcgggcaggaactgttgtactaaat
gatggggaggagctcgattcctggtcagttattttaaatggctcagtagaagtgacatat
cctgatggcaggacagaaatactttgcatggggaacagctttggtgtgtcgccaaccatg
gagaaggaatacatgaagggagtcatgagaaccaaagtggatgactgccagtttgtgtgc
atcgcccagcaagattactgccgcatcctcaatcaggtggaaaagaacatgcagaaagtg
gaagaggagggtgagattgtgatggtgaaagagcacagagagcttgatcgcaccggaacc
aggaaaggtcatattgtcatcaagggaacatcggaacgcctaaccatgcatcttgtggaa
gaacattctgtggttgacccaacatatattgaagattttctcctcacttacagaactttc
ctttctagtccgatggaagtgggaaagaaactactggagtggtttaatgaccctagtctc
agggacaaggttacacgagtagttttgctctgggtaaataatcactttaatgactttgaa
ggggacccagccatgactcgatttttggaagaatttgagaacaatttggaacgtgagaaa
atgggtggccacctaaggctattaaatattgcatgtgctgccaaagcaaaaagaagattg
ataactctaacaaagccctcccgagaagcccccttgccttttaacctgctgggagggtca
gacaagggatttggcatctttgtagacagcgtggatccaggaagcaaagcagcagagact
ggcttaaagcgaggggatcagattttggaggtaaatgggcagaactttgaaaacattcaa
cttaccaaggctttggaaatcctaaggaacaatactcacttgtctctcactgtgaaaaca
aatttatttgtgtttaaggaacttctggccagaatgttagaggaaaagagaaatagtgcc
ccacacttgcccaaaattggagacatcaaaaaagccagccgctattctattccagacctt
gccgttgatgttgaacaagttattggacttgaaaaagtgagcaaaaagggcaaagccaat
actgtcggaggacgaaacaagctgaaaaagattcttgacaagacacggatcagtatcctg
cctcaaaagccttacaatgatattggaatcggtcagtctcaagatgacagcattgtcggt
ctccgacagaccaagcacatgccggctacactacctgtcagtgggacattatcttccagc
aatccggatttactgcagtcccatcaccgcatcttagactttaatactacaccagaacaa
ccggaccaggtgctgagagttttcaaggccgatcagcagagccgttacataatgataagc
aaggacaccaccgctaaggaagtggtcatccaggcaatcagagaatttgcattaactgcg
gtacctgatgcctactcattgtgtgaagtgtctgtcacccctgaaggtgtcatcaaacaa
aggcggcttcctgatcagctttccaagctggctgacagaatacaactcagtggcaggtat
tacctaaaaaacaacatggaaactgaaacactatgctcagatgaagatgcccaagatctt
ctaagggaaagtcagatctctttgctacagctcagcaccattgaagtggcaacacagctg
tctatgagaaattttgagctatttaggaacattgagcccaccgagtacattgatgacttg
ttcaaactgaaaatgaaaactggctgcaccaacctcaaaaacttcgaagaagtcattaac
caagagaccttctgggtagcctcagaaattctaagggaaactaaccagctaaaacggatg
aagatcatcaagcattttatcaagatcgcactacattgtagagagtgcaagaacttcaac
tccatgtttgctatcattagtggcttaaatttggcaccagtttcaagactccgaacaact
tgggaaaaactcccaagcaaatatgagaaactctttcaagacctccaggacctctttgac
ccttccaggaacatggctaaatatcggaatgtgctgaatagtcagaaccttcagcctccc
attatacctttatttcctgtcattaagaaagacctcaccttccttcatgagggcaatgac
tccaaagtagacggattagttaactttgagaagcttaggatgattgcaaaagaaatccgc
catgtgggaagaatggcttcagtaaatatggatccagctcttatgttccgaaccaggaag
aagaagtggaggagtctggggtctctgagtcaaggcagcaccaatgctacggtcctcgac
gtcgcccagtcggggggacacaaaaaacgtgtgcgtcgcagctctttccttaatgccaag
aaactgtacgaagatgctcagatggctcgcaaggtgaagcaatacttatctgatctagat
cttgaaatggatgaagagaatcttcagacactttctgtacagtgtgaaccagcaaccaac
acattgccaaaaaatccatgtgagaagagagcagggaagccagacacatcgcctgtggca
ccacgggcagcagcacaacacaaacagcaacagcagcagcaaactaaggtcaaccaggca
ttgcaagttcctgctgtggctctttacccatctcgtaagaaagtgccagtcaaggatctt
ccacccttcggcatcaactctccccaagctttaaagaaaattctttcgttatcagaagaa
ggaagtttggaaaggcacaagaagcaagcagaggacaccatatcaaatgcatcctcgcag
ctttcatcccctccgacatccccgcagtgctctccaaggaaaggttacacaatggcagct
agtggcacagtggataacttctctgattcagggcacagtgaaatctcctcccgctccagc
attgtcagtaactcttcttttgactgcgtgcacttgcacgatgaccggcggcagaggcat
tccctaagcatagtggagaccaatcttggtgtgggaagggctgacagaagagccattata
gatgcagaccagtgcagcctaggctcttacgcgccagtggcagagactcggggcctctat
gcaggtgcaacagttctctcctcccccagcatggaggagctttcccaggatcagggggat
cgagcttctttagatgcagcagatagtggccgtggaagctggacttcatgttccagcgga
tcccatgataacatacaaactatcccacatcagagaagctgggagactcttccttttggt
catgttcattttgataacacagctgatgggtcagggttttgggccacaggtggccacatg
gaccacgggatatttcctgatcatagcacaaaatatggcagatacagccaaggaagagaa
cctttggatcaagcacagtcaagagccagctgggcatcatcaacaggctactggggcgag
gactcagaaggtgataccggcaccattaagagaagaggtgggaaagatgtggcccttgaa
gctgaaaccagcagtataacatcaatgactcctgaagaaacaaagcctctccctgtaccc
acacatgtagctgtgactgcaagttctgcaaaagggctcattgcaaggaaagaaggccgg
tacagagaaccgccgcccacacctccaggctatgtaggaatccccatagctgactttgcc
gatggacacccacctctatccagaaagccaccagattacaatgtggccttgcagcgttcc
agaatgatggctcggagaagtgaaagtgaagggtcagcagcaacctctccgccatcacat
aatcagacttctggcaggactgcaaacaaaccccagtggcataaaccaaacgaggctgac
ccaaggcttgctctctatcaggcacaaggggttacagaaaaagatgatgccgatgatgag
caagtatctgccgtctaa
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integrated database retrieval system
