Xenopus tropicalis (tropical clawed frog): 100145668
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Entry
100145668 CDS
T01011
Symbol
clstn1
Name
(RefSeq) calsyntenin-1
KO
K22659
calsyntenin 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100145668 (clstn1)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Cadherin related
100145668 (clstn1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
Glyco_hydro_16
Motif
Other DBs
NCBI-GeneID:
100145668
NCBI-ProteinID:
XP_002940356
Xenbase:
XB-GENE-5757720
UniProt:
A0A6I8QAH9
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Position
7:55894261..56038846
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AA seq
988 aa
AA seq
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MVSFNRIIFRHGIVSRGSLKQGGPAKTWTSKQLETKLQFVNRCQYRGSNEVMAGMWHPPA
CLLLLVGFVHGIWGVQVNKHKPWIETAYHGIVTENDNAVLLDPPLIALDKDSPLQYAGEI
CGFKIHDQDVPFEALVVDRSTGEGLIRSTKQLDCEIQKDYTFSIQAYDCGKGPDSSSVKK
SHKASVHIQVNDVNEYAPVFKEKSYKVTVREGKKYDNILRVEAVDADCSPQFSQICSYEI
VTPDVPFTIDKDGFIKNTEKLIYEKEHQYKLTVTAYDCGKKRAAEDILVKVSVKPTCKVS
WQGWNKRIEYEPGSGSLSLFPGMHLETCDEPITSITAHVQLETSHIGKGCDRDTYSEKSI
HKLCGSSSDVVELLPSPSMTTNWTLGLPTDNGHESDQVFEFNGTQAVKIPDEFVTLNFDE
PFVISVWMRHGTGGKEKESVLCFSGKTEISQHHYFLYIHNCKLGFLLHQVASEEIYKPAE
FNWKLNQACDKEWHHYVLNVELTTVTLYVDGVLFEPSAVTEDYPMHPYPIYSQLVVGACW
EGDERQMGQFFSGNLAGLMIHSGKLENKKVIDCLYTCKEGLELHTVDGIGEAVKINLNTS
RSDVTLEGNEIDKCDQAMQQVSYVNSRQFPTPGMRRFTITTSVRCFNEETCITIPDVEGY
IIVLQPEEPRISIKGIDHFARSASEFESNGGVPLFPELHIISTITREIESDGEDPTVQES
LVSEEIVHDLDTCEVVVMGEELNPGEESLQLDVTHLQQTRIEISSSNYGISLTGIDSMEN
YEELLHLIRYRNWNTVSLFDRKFKLICSELNGRYISNEFHVEVNVIHTASHVEVPNHIMA
QPQFVHPMHPLFGDLTGHNIANPHASSVVPSAATIVIVVCVSFLVFMIILGVFRIRVTHQ
RALRDQEGGKENEMDWDDSALTITVNPMETYEGQQSSGEEEDSEEGDDDDITSAESECSE
EEDEEQEGDQQNINKQQQLEWDDSTLTF
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggtgagctttaatcgtataatattcaggcatggtatcgtttcccgagggagcttgaag
caaggtggaccagcaaagacgtggacaagcaaacaattagaaacaaaattacaatttgta
aatcgctgccaatacagagggagtaacgaggtgatggctggaatgtggcatcctccggct
tgccttttactccttgtcggatttgtgcacggtatttggggtgttcaagtaaataaacat
aaaccatggatagaaaccgcttaccatggtattgtaacagaaaatgataatgctgttttg
ttggaccctccactgattgcattggataaagattcgcctctccaatatgcaggtgaaatt
tgtggatttaagattcatgaccaggatgtcccttttgaggcattggtcgttgacagatct
actggggaaggtctaattcgttctaccaagcagctggactgtgagatacagaaggactac
accttctcgattcaagcttatgactgtggcaaaggacctgatagctcctctgtaaagaaa
tctcacaaggcatcagtacacatacaagtaaatgatgtgaacgagtatgcaccagtcttc
aaagaaaaatcctacaaagttactgtccgagaagggaaaaagtatgataatatattaagg
gtagaagctgtagatgctgattgctctccgcaatttagtcagatctgcagctatgagatt
gtaacacctgatgtgcctttcaccattgataaggatggttttattaagaacaccgagaaa
ttgatttatgaaaaggaacatcagtacaaacttactgttactgcctatgactgtggaaag
aaaagggcagcagaagacatactggtaaaagtaagcgttaaaccaacatgcaaagtcagt
tggcaaggatggaataaaagaatagaatatgagcctggttctggttctttatcactgttc
cctgggatgcacctggaaacttgtgatgaacccattacctcaattacagcacatgtacaa
ttggaaacaagtcatattggtaaaggatgtgacagggatacatactctgaaaagtcaatt
cacaaactttgtgggtcttcctctgatgtagtagaactgcttccatctcccagcatgacc
acaaactggaccttagggcttcccacggataatggtcatgagagtgaccaggtatttgaa
ttcaatggcactcaggcagtaaagattccagatgaatttgtgactttgaactttgatgag
ccctttgtgatttctgtttggatgcgacatggaactggtggcaaagagaaggaatcagtg
ttgtgcttttctggcaaaacagaaataagtcagcatcactattttctctacatacacaac
tgcaagctaggttttctccttcaccaggtggcttcagaggagatctataaacctgcagaa
ttcaattggaaacttaaccaggcatgtgacaaggagtggcaccactatgttcttaatgta
gagcttaccactgtcacactatatgtagatggtgtcttatttgagccttctgcagtaact
gaagattatcctatgcatccttatccaatatacagccaactggttgttggtgcctgttgg
gaaggtgatgaaagacagatgggtcaattcttcagtggaaaccttgcaggactaatgatc
cattcagggaaactggagaacaaaaaagttatagattgtttatatacctgcaaagaggga
ttggaattgcacactgtggatggaattggggaagctgtaaagatcaacttaaacaccagt
cgttctgatgtgacattggaaggaaatgaaattgataaatgtgaccaggcaatgcagcaa
gtttcctatgtcaattcacgccagtttcccactcctggaatgaggcggtttacaatcacc
accagtgtaagatgcttcaatgaggagacatgcattaccataccagatgtagaaggttat
atcatagtcttgcagccagaggagcccaggatcagtataaaaggcatagaccactttgct
cgttctgcctcagaatttgagagtaatggaggggtgcctctgttccctgagttgcatata
atcagcacaattacaagagagatagaaagtgatggagaagatcctacagttcaagaatcg
ctagtctctgaagaaattgtgcacgacttggacacttgtgaggttgttgtgatgggagaa
gagctgaacccaggggaggagagccttcagctggacgtgactcatctacagcaaacaaga
attgagataagcagctctaattatggcattagcctcacaggtattgattctatggaaaat
tatgaagaattactgcatctaattcgctacaggaattggaatacggtctctctgtttgac
aggaagtttaagctgatctgctctgaactaaatggccgatacattagtaatgagttccat
gttgaggtgaatgtcatccacactgccagccatgttgaggttccaaatcatattatggct
caaccccaatttgttcatccaatgcatcccctttttggagacttgactggtcacaacata
gctaaccctcatgcttcatcagttgtccccagcgctgctactattgtaattgtagtttgt
gtcagtttccttgtcttcatgattatactgggagtctttcgtatccgtgtgacccatcag
cgtgcgttaagggaccaagaaggaggcaaggaaaatgagatggactgggatgattcagca
cttacaataacagtcaacccaatggagacatatgaaggacagcaaagcagtggggaggag
gaggacagtgaagaaggagatgatgatgatatcacaagtgcagaatctgagtgcagtgaa
gaagaagatgaggaacaagaaggcgatcaacagaatataaataagcagcaacagcttgaa
tgggatgactccaccttaaccttttaa
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