Xenopus tropicalis (tropical clawed frog): 100158526
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Entry
100158526 CDS
T01011
Symbol
trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xtr04040
]
100158526 (trpa1)
Ion channels [BR:
xtr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100158526 (trpa1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
100158526
NCBI-ProteinID:
NP_001121434
Xenbase:
XB-GENE-1004945
UniProt:
B2GU85
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Position
6:complement(120746375..120780978)
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AA seq
1144 aa
AA seq
DB search
MRRSIRRILSSTAKKDNVYEGVFLQTGSVCSLDDNPLLIFKLIAEGNVCRVRNFVLKNPG
SLAARDDSEATPLHHAAKLGNIDLMLMIVNESAEEGINALDSRGNTPLHWAVQKNKLDCL
KVLLCRGADPNIQNCYRLSPLHLAIQLFHNSIAEALILHSTTDINLEGDLGNTPVMQACC
KDNHEALNLLLGRGAKLCKQNKLGCYPIHMTAFMGSLKCMDIILKKGEEMGYTIDHHINF
TNNEKSSPLHLAVQNGNIDVVKACISYGAKIDLRQSDNATALHFAATQGATEIVKFMVSS
YSDDNKIVDLPDGNDETPLHKSVLFDHVELAEYLISEGANIDSEDKESRTPLLLATSCSA
WKSVNLLLSKGADVKLKDHYGRNFLHLMVLQPGGLKNLNSEFLQMENIKKLVSDEDCEGC
TPLHYACRHGVPNSVNNLLGLNMSLYSKSKNKRSPLHFAACYGRFNTCQRLLRFMSDGRL
LNDGDEKGMTPLHLAAENGHEKIVFLLLKRGALLLSDHRGWTALHYAALSGYTRTIKTLL
ETSIGLIDKTDKEQNTAMHLAGREGHAKAVSLLLENGASILLNANGASYIHEAIRFGKKD
TVLVSIQSERWEEILQTFSHTSSYKCAILEMIYHLPESFKTLLDRCMTESIGDKKSPDFH
VEYNFTYLQCPLSFRKAHKRENNVHYEPLTTLNAMVQHQRIDLLSHPVCKEYLLMKWMAY
GFKAHLLNLAIYSLGLIPLTLLIINAVRPESLAIIEECEHLKRTDFYNSSMKQECANVSR
KLDLLQLKDTQYTRVCMGLVFCMSLFGIVKEAVQLCQQKLAYIGDGSNIIDWSIYISSII
FVSSLCHSPIVVSGLQWQFGAIAVFASWVNFLIYLQRFESYGIYIVMFWEILRTLLRIVF
LFFFLILAFGLSFYVFLYPQVTFSRPYFALMQSFTMMLGDINYEEGFLKPLLDDQIEYPF
FTFIHLIMFTLLIPILLMNLLIGLAVGDIAEVQRNACLKRIAMQVSLHTSLEKKLPFWFL
KRVDKISITVYPNRPRIWGITFTSNFFHYFSSCDDVKAEIPINDETMELELWKQKNRLKD
LTTMMQKQNDLIKLIIQKMEIVSEAEDEDGDNICQSKMMKKQKLDRKESKWDCVAKAVKS
CKNV
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggtcgatcagaagaatactgagctccacagccaagaaggacaatgtatatgag
ggcgtctttctgcaaactggcagcgtttgctccctagatgacaatccattactgatattt
aagcttattgcagagggtaatgtttgccgtgtccggaacttcgtactgaagaatcctgga
agtctggcggctagggatgattctgaggctaccccgcttcaccatgccgctaaactggga
aacatagatttaatgctgatgattgttaatgaatctgcagaagaagggataaatgcattg
gattccagaggaaatacacctcttcactgggctgtgcagaaaaataaattagactgtctt
aaagttctgttgtgtagaggagctgacccgaacatacaaaactgctacaggctgtcacct
cttcatctggcgattcagctctttcataattccattgctgaggcattgatcctccatagt
acaacagacattaatcttgaaggagaccttggtaatactccagtaatgcaagcatgttgc
aaggataatcatgaggcactgaatctgctgcttggtcgaggagcaaagctgtgtaagcaa
aacaagctgggatgttatccaatacacatgactgcctttatgggatcgttgaagtgcatg
gacattattttaaagaaaggggaagagatggggtacactattgatcatcacattaatttc
acaaacaatgaaaaatcaagccctctccatttagcagttcaaaatggaaacattgatgta
gtgaaagcctgcatttcatatggagcaaaaatcgatctgagacagagtgacaatgcaaca
gctctgcattttgccgccacacaaggtgcaactgaaatagtgaaatttatggtttcatcg
tacagtgacgataataaaattgtcgatttgcccgatgggaatgatgaaacaccacttcac
aaatcggtgttgtttgatcatgtcgaactggcagagtatttaatatcagagggagcgaac
attgacagtgaggacaaggaatcacgtactcctctccttttagccacttcatgctctgct
tggaaatcagtaaatttacttctttctaaaggtgcagacgtaaaactaaaagatcattat
ggaaggaattttttgcatcttatggtactacagccaggaggcttgaaaaacttaaatagc
gaatttctgcagatggaaaatattaaaaagcttgtaagcgatgaggactgtgaaggctgc
acccctctccattatgcatgcagacatggggttccgaactcagtcaataacttgcttggt
ctgaacatgtctctgtattccaaaagtaagaacaaaagatctcctctgcactttgctgca
tgctatggccgtttcaacacctgccagcgactcttgaggtttatgtcagatggcaggctt
ctcaacgatggagacgagaagggaatgacgcccctccacttagctgcagagaacgggcat
gaaaagattgtttttctccttctaaaaagaggagctttacttctaagtgaccatcgtggg
tggacagctctacattatgctgcattgagtggctatacccgtacgatcaagactcttctg
gaaacttccattgggctcattgacaaaacagacaaggagcaaaacactgcaatgcatctg
gctggacgagagggacatgctaaggctgtcagcctacttctggaaaatggagcatccatt
ttactgaatgcgaatggagcatcgtacattcatgaagcaatacgctttgggaaaaaagat
accgtacttgtctcaattcagagtgaacggtgggaagagatcctgcaaacattctcacat
acttccagttacaaatgtgctattcttgaaatgatatatcatcttccagaatccttcaaa
acgttattagacagatgcatgactgaatccattggagacaagaaaagtcctgattttcat
gtagaatacaacttcacatatcttcagtgtccactgagtttcagaaaagcgcacaagaga
gaaaataatgtacattatgaacctttaacaactttaaatgccatggtccaacatcagcgt
atagatcttttgtctcatcctgtatgtaaagaatatttgcttatgaaatggatggcctat
ggatttaaggcacatctcctgaaccttgcaatatattccctgggcctaattcctctcacc
ctgctgataatcaatgcagtgaggccagaatctttagccataattgaagagtgcgaacac
ttaaagcgaacagatttttataactcgtccatgaagcaagaatgtgcaaatgtgtcgagg
aagctcgatctattacagctcaaggatacccagtacacacgagtctgtatgggccttgtg
ttttgtatgagtctatttggaattgtaaaagaggctgtgcaactctgtcagcagaaactt
gcatatatcggtgacggaagcaatattatagactggtccatctacatatccagtattatt
tttgtatcatctctgtgtcactcaccaattgtggtatcaggattgcaatggcaatttgga
gcaattgctgtgtttgcatcttgggttaactttctgatttatctccaaaggtttgaaagt
tatggaatttacattgtgatgttttgggagattctgagaacccttttgcgaattgtcttt
ctgttctttttcctaattctggcgtttggactgagcttctacgtatttctgtatcctcag
gtgaccttcagcaggccctactttgccttaatgcagtcatttactatgatgttgggagat
attaactatgaagaaggattcctaaaaccactacttgatgaccaaatagagtacccattc
tttacatttatccaccttattatgtttacattgctgatacctatcctacttatgaatttg
cttattggtttggctgtcggcgacattgcagaagtacaacgaaatgcatgcttgaaaagg
attgccatgcaggtgagccttcatacaagtttagaaaagaagcttcctttctggttctta
aaacgtgtggataagatcagcattaccgtgtacccaaacagaccacggatctggggaata
actttcacatcaaatttttttcattattttagttcttgtgatgatgtgaaagcagaaatt
cccataaatgatgaaactatggaattggagctttggaaacagaaaaacaggttgaaggac
ctcaccacaatgatgcagaagcaaaatgacctaattaagctaatcattcagaaaatggag
attgtctctgaggctgaagatgaagatggcgataatatctgtcaaagcaaaatgatgaag
aaacaaaagcttgatcgtaaagaaagcaaatgggactgtgtagcgaaggctgtaaaatcc
tgtaagaacgtttag
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