Xenopus tropicalis (tropical clawed frog): 100158546
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Entry
100158546 CDS
T01011
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100158546 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100158546 (cnot3)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100158546 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100158546 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
Motif
Other DBs
NCBI-GeneID:
100158546
NCBI-ProteinID:
NP_001121452
Xenbase:
XB-GENE-6087000
UniProt:
B2GUB5
LinkDB
All DBs
Position
7:complement(104895896..104934347)
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AA seq
727 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEDVGQWLTNTIDTLNMGVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
IRMLETILRMLDNDSINVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPATCTTVSAENSEDDKKIRGRSTDSE
VSQSPAKNGSKSVHNNHHPQSPAVTPSYQIGSNSSTSSSLGNGPGTNSNGAVSNSSSTNS
SSNSKNNPASGHTSGTPTPYAQAVAPPSSNTNTSQPRPPSAQQNTSKQNGASSYSSVVAE
NSTDSSLSNSSQTQSSQSVIHNPPTSSAKSDISSSSQPANNSSTSTGSSLLLPLNVNPPS
SPTPNFSDPKPSQPLLNGPPQFASTAEIKAPEPLSTLKSMAERAAIGSSLEDPVPTIHLA
EREMLITTTTAQPPSSQPPTQLSEVNIPLSLGVCPLGPVPLTTDQLYQQAMEDAAWHHMP
HPSDSERIRQYLPRNPCPTPPYHHQIPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYL
AAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRY
LEDRDLQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagcgaaaactacaaggtgagatcgatcggtgtttgaaaaaggtttctgaa
ggcgtagagcaatttgaggacatctggcaaaagcttcacaatgcagctaatgcaaaccag
aaagaaaaatatgaagcagacttaaagaaagagattaagaagctacagagattgcgggac
caaataaagacatgggtagcatcaaatgaaattaaagacaaaaggcagcttattgaaaat
cgcaagttaatagaaacgcaaatggaaaggtttaaagtggtggaacgagagacaaagaca
aaagcctactccaaggaaggattaggtctggctcaaaaggtggacccagcccaaaaagaa
aaagaagatgttggacagtggttaactaacacgatagacacgttaaacatgggagtggat
cagtttgaaagtgaagtggaatcgttgtcggtacaaacaaggaaaaagaaaggagataag
gatcagaagcaggacaggatcgaaggactgaaacggcacatagagaaacacaggtaccac
atccgaatgctggaaacgattctgcgaatgttggacaatgactccattaacgttgatgcc
attcggaaaattaaggacgatgtagagtattatgtggactcctcacaggatccagacttt
gaggagaatgagtttctgtatgatgaccttgatttagaagacattccacaggcgctggta
gctacctccccaccaagtcacagtcacatggaggatgagatctttaatcagtctagcagc
actcccacctccaccacctctagctctcctattccacctagtcctgccacatgcaccaca
gtaagtgctgaaaattctgaggatgacaagaaaattcggggtagatctactgacagtgaa
gtaagccagtcaccagcaaagaacggttcaaaaagtgtccataacaatcatcatccacag
tccccagcagtgacgccaagttaccaaataggaagcaattccagtacatcctcatcactt
ggaaatggtcctggtacaaacagcaacggggcagtatccaacagcagtagcacgaacagc
agcagcaacagcaaaaataatccggcttccgggcacacgtctggcacgccaacaccttat
gcacaagcggtggctcccccatcatcgaatacaaatacttctcagcctaggccgcccagt
gcccagcaaaatacaagcaagcaaaatggagccagcagttacagctctgttgtagcagaa
aactccaccgactcttccctcagtaatagtagtcagacgcaatcaagccagtctgtgatt
cacaacccaccaaccagctctgcgaaatccgatatcagcagttcatctcagccagccaac
aacagcagtaccagcactggatctagtttattgttaccgctaaatgtaaatcctcctagt
tcgccaacaccaaattttagtgaccccaaacccagccagccattgttaaacgggccacct
cagtttgcatctacagcagagattaaggctccagagccactaagcaccttgaaatccatg
gctgaaagagcagctattgggtcaagtttagaagacccagttcctactattcacctggct
gaacgagaaatgcttatcactacaacaacagctcagccaccttccagtcagccccccaca
cagctttcagaagtgaacatcccactttctctgggcgtctgtcctttgggtcctgtcccc
ctcacaacagatcagctttatcaacaggcaatggaagatgcagcgtggcatcatatgccc
catccatcagactcagagagaatacgacaatacctcccaaggaatccatgccccacacct
ccgtatcatcaccagattcctcctcctcattcggacaccgtagagttttatcagaggctt
tccacagagactctgtttttcatcttttactatcttgagggcactaaagcacagtattta
gcagccaaagcgctaaagaaacagtcttggaggtttcacaccaaatacatgatgtggttt
caaagacacgaagagcccaaaacaataacagatgaatttgaacaggggacatacatttac
tttgactatgagaaatggggccagaggaagaaagaaggatttacatttgaataccgttat
cttgaggatcgcgacttacaatga
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