Xenopus tropicalis (tropical clawed frog): 100170149
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Entry
100170149 CDS
T01011
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1 isoform X2
KO
K26273
protein strawberry notch
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100170149 (sbno1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100170149 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
100170149
NCBI-ProteinID:
XP_002935243
Xenbase:
XB-GENE-479411
UniProt:
F6YBA0
LinkDB
All DBs
Position
1:161082781..161118848
Genome browser
AA seq
1395 aa
AA seq
DB search
MMDPGQDLLLAALSESGISANDLFDGDSLDIGLIAPTPLPAIQQAVSISGSGISKENEAS
VLKQEPLATSASALLNVRPPSTTTFVLNQINQLPTLGNTIVMTKNTPVTTTRQTITVTKI
LQTNSTTRPSTAAPVVQTTVAAVPSKDQIQLKDLLKTSSLNKLMKLKPPSNIAQPVATAA
TDLPNGAKKDISKEVTRIWINEDIKMRSFSPTNKVPVKEDEEPEEEDEDEMGHAETYAEY
MPIKLKVGLRHPDPVVETSSLSSVTPPDVWFQTTIPEETIDNGWLSALQLEAVTYAAQQH
ETFLPNGERAGFLIGDGAGVGKGRTIAGIIFENYLLSRKRSLWFSVSNDLKYDAERDLRD
IGAKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRLKQLLHWC
GEDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQNKLPKARVVYASATGASEPRNM
AYMSRLGIWGEGTPFREFNDFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFTGVTFKI
EEVPLGHDYVKMYNKSVKLWVLARERFQQAADLIDAEQRMKKSMWGQFWSAHQRFFKYLC
IASKVRRVVQLAREEIKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTARGVLQSLI
EKHFPAPDRKKLFSLLGIDLSAQSNNNSPRDSPSKDSKVKKRKGEELLREAKKPRKSGGL
AGSSSDDMGSESDTSEKDAGSESESFKSVSSGDDDDFNPFRDESSEDEEDDPWLIRKDHK
KNKHKKKKKKSIDPDSIQSALLASGLGSKRPSFSSVVKAAATSTTTTTSVPAPLNNTNVS
NSCVTSQDAVERAQQMKKELLDKLENLAEALPPNTLDELIDELGGPDNVAEMTGRKGRVV
SNDDGSISYESRSELDVPVEILNITEKQRFMDGEKNIAIISEAASSGISLQADRRAKNQR
RRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGA
LTHGDRRATESRDLSRFNFDNKYGRNALEIVMKSIVSLDSPLVSPPPEFPGDFFKDVRQG
LIGVGLINVEDRSGILTLDKDYNNIGKFLNRILGMEVHQQNALFQYFSDTLSAVIQNAKK
NGRYDMGILDLGSGDEKVRKSDAKKFLTPGYSTSGHVELYTISVERGMSWEDATKIWAEQ
TGPDDGFYLSLQIRNNKKTGILVKEINPKKKLFLVYRPNTGKQLKLETLLDLKKKYKKVT
SEDAQSHWKEQYISSADICTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKV
EGVLASVSGTNVKMQIVRLRTEDGQRIVGLIIPANCVSSLVTLLSTSDQSQQIAVQQQQM
WQQLHPQSISNFSTL
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccaggccaagatttattgcttgctgctctgagtgaaagtggtataagtgcc
aatgacctttttgatggagattccttagatattggccttattgccccaacaccattgcca
gccattcagcaggctgtgtcaattagtggatcaggaatcagcaaggaaaatgaggcatct
gttttaaagcaagaaccattggctacatctgcctctgctttattgaatgtcaggcctcca
tcaacaacaacatttgtacttaatcaaattaatcaattaccgacactgggtaacacaatc
gtaatgacaaagaacacacctgtaaccacaactcgacagacaattacggtaaccaaaatc
ctgcaaaccaattctacaacaagaccatccacagctgcacctgttgtacagactacagtg
gctgctgtgccatctaaagatcaaatacaactgaaagacctgcttaaaactagcagcttg
aataaactaatgaaactgaagccaccttcaaacatagcacagcctgttgcgacagctgct
actgacctacccaatggagcaaagaaagatatttctaaggaggtaacaaggatatggatc
aatgaggatatcaaaatgagaagtttctcccctactaataaagtcccagttaaagaagat
gaagaacctgaagaggaagatgaagatgaaatggggcatgcagagacttatgctgagtac
atgcccataaaattaaaggttgggcttcgtcatcctgaccctgttgtagaaaccagctct
ctgtctagtgtgacgcctccagatgtttggtttcagaccactataccagaggaaactatt
gataatggctggctgtctgctcttcagttagaagctgtaacctatgctgctcagcaacat
gaaactttcttgcctaacggggaaagagctggttttttgattggtgatggtgcaggagtt
ggcaaaggaagaactatagctggaatcatatttgaaaattatttactcagtaggaaaagg
tccttatggtttagtgtctcaaatgacttaaaatatgatgctgaacgagatctgagagac
attggggctaagaatattcaggttcattctcttaacaagttcaagtatggtaaaatatcc
tctaagcataatggcagtgtaaagaaaggagtcatatttgctacctattcttcccttatt
ggtgaaagccagtctggtggaaaatataaaacccgcttaaagcagcttctgcattggtgt
ggagaagactttgatggtgttattgtgtttgatgagtgtcataaagctaaaaatttgtgc
cccgttggttcttccaaacctacaaagaccggtttagcagtgttagaacttcaaaacaag
ctgccaaaagctagggtcgtatatgctagtgccacaggtgcctctgagccaagaaatatg
gcttatatgagtcgacttggaatttggggtgagggaactcctttcagagaattcaatgat
tttatccaagctgttgaaagaagaggtgtgggtgcaatggagatagttgccatggatatg
aaactaagaggaatgtatattgcaagacagctgagcttcaccggagtcacatttaagatt
gaagaggttcctctcggccacgattatgtaaaaatgtacaataaatctgtcaaattgtgg
gtgttagccagagagaggttccagcaggcagcagatctcatagatgcagaacagcgaatg
aagaaatccatgtggggtcagttttggtctgcccatcagagattttttaaatatctctgt
atagcatccaaagtccgaagagttgttcagcttgcaagagaagaaataaaaaatggcaag
tgtgttgtaattggcttgcaatctactggagaggcgagaactttggaagctttggaggaa
ggaggtggggaactaaatgactttgtctctacagcaagaggagttctgcaatctctgatt
gagaagcattttcctgctcctgatcgaaaaaaactcttcagcttacttggaatagactta
tcagcacaaagcaataataattcccctagggatagtccaagcaaagacagcaaagtgaag
aaaaggaaaggtgaagaattattaagggaagccaagaaacctcgtaaatcaggtggcctt
gcaggcagtagctcagatgatatgggcagcgagtcagacacttctgaaaaggacgcaggg
agtgaaagtgaaagctttaaatctgtcagctctggtgatgatgatgattttaatccattt
agagatgagtcaagtgaggatgaagaagatgatccatggctaattagaaaggatcataag
aaaaacaaacacaaaaagaagaaaaagaaaagcattgatccagattccattcaaagtgcc
ttattagcctctgggcttggatctaaacgtccaagcttctcgtctgttgttaaagctgca
gctaccagtactactaccactacaagcgttccagcacctttaaataatactaatgtaagt
aatagctgtgtgaccagtcaggatgctgtggagagggcacagcaaatgaagaaggaactg
ctggacaaactagaaaacttggctgaagctcttcctccaaacacactagatgagctcatt
gatgaactgggaggtcctgataatgtagcagagatgactggacggaagggtagagtcgta
agcaacgatgatggaagcatatcttatgagtcgcggtcagaacttgatgtgccagtagaa
atattaaatatcacagaaaagcagagatttatggatggtgagaagaatatagcaatcatc
tctgaagcagcaagttcaggaatttcgttgcaagctgaccgtcgagctaaaaatcagagg
cgcagggttcacatgacattggaattaccttggagtgcagatagagccattcagcagttt
ggaagaactcacagatccaatcaggttacagctcctgaatatgtcttcctaatttctgaa
ctagctggagaacaaagatttgcttcaattgttgcaaaaagattagaaagcttgggggca
ttaacacatggagacaggagagcaactgaatcaagggatttaagtagatttaattttgat
aacaagtatggtagaaatgccctggaaattgttatgaaatccattgtaagcctggattcc
ccactggtgtctcccccacctgaatttcctggtgacttcttcaaagatgtgcgacaggga
ttaattggcgttggccttattaatgttgaagacagatcaggaattctgactcttgataaa
gattacaacaatattggaaagttccttaaccgtatcttgggcatggaagtgcatcaacaa
aacgccctcttccagtatttctctgataccctcagtgctgttatacagaatgccaaaaag
aatgggcgatatgacatgggcattttagatcttggatccggagatgagaaagtgaggaag
tctgatgccaaaaagtttttaacacctggttattctacttctggccatgtggagttgtat
acaataagtgttgaaagaggaatgtcatgggaagatgcaactaaaatctgggctgaacag
actggaccagatgatggattttatttatctctccagataaggaacaacaaaaaaactggc
atattggtgaaggaaattaatccgaaaaagaagcttttcctggtgtacagaccaaacaca
gggaaacaactgaaattagaaactttattggatttaaaaaagaagtacaaaaaggtaacc
tctgaagatgcccagtctcactggaaagagcagtacatatcctctgcagatatctgtact
catgcttattggcggggtaactgcaaaaaagcaagcttgggcctggtctgcgagattgga
ctgcgctgccggacatactatgtattgtgtggctctgttttaagcgtgtggactaaagtg
gaaggagttctagcttctgtcagtggtacaaatgtcaaaatgcaaattgtccgcttaaga
actgaagatgggcagagaattgttggtttgatcattcctgcaaattgtgtctcctcacta
gtgacactgctgtccacttctgaccagtctcagcaaattgcagtccaacagcaacagatg
tggcaacaactccaccctcagagtatcagcaacttcagcaccctgtaa
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