Xenopus tropicalis (tropical clawed frog): 100170197
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Entry
100170197 CDS
T01011
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100170197 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100170197 (pcf11)
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100170197 (pcf11)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100170197 (pcf11)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100170197 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
PCF11_RFEG_rpt
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DNA_pol3_a_NI
DUF6980
VHS
Motif
Other DBs
NCBI-GeneID:
100170197
NCBI-ProteinID:
NP_001123416
Xenbase:
XB-GENE-5846364
UniProt:
B3DLW9
LinkDB
All DBs
Position
2:170686158..170705084
Genome browser
AA seq
1698 aa
AA seq
DB search
MSAEDEAREDARRDYQSSLEDLTFNSKPHINMLTILAEENVQFAKDIVILIEAQIAKARA
TEKLPVMYLMDSIVKNVGRDYLAAFAKNLVTTFICVFEKVDENTRKSLYKLRSTWDELFP
SKKLYALDVRVSQIDPAWPVKPLPPNVNTSSIHVNPKFLNKPEESPPAKASAPSPAPPRA
ANSEAQKHLSQEQLIRQQLLVKQKQLLELQQKKLELELEQTREQLATSLSSSKPVVSPKI
PHMPVKAPPPVSEKSKVPAPTQRIEKSHEKMPVPTRDPRLVKGNQHSAHGKDQGHKKEMK
SNMACMPDLKPIKPLLNDKANASAKQEKAKSNEKLPKRELVQSELKDRSKSPSPLKAKLS
HMRDKSQGTENVRDLDISRRDPRLHKHLRNKSDDKDAEPKEKRKCDKKEEHKSEHRVAGN
RNKPVNGIVPKNETSTNYPDKTKPGRIGNRKRSRSPKSRSPAHSPKGRDRRSPKARPRSI
SPVHSLPKIGRLRQPGSKQSHTEDFNASSREERIKRNAKTDARDGRRQKRLSEERPQDPV
SLISNKSNTEPKEDIENWQGPKANKRWKSGWEDNKNSQNDDHQGNRPPYQRHNSWQNSTK
GVASPRAPKQQHWLSVDADLKIPKELTSASKAELLKKANERFSLGEITHDELLVVVHQIR
QLFQYQEEKQRGSVWDSPTEENKGALRKKPLLSNPETTYYEHKAKLKRTQVQHAFADREY
MDPEYLDMELDEMAHSGRDGELSGRAEDKMPERNEQFPERQRLSPLLGTRHPDEDAHDGY
RRHEDQRELSKGLREEPRPLFPERFPRSVPMYDESEEAPYEENADSRMSGNKANPKLPLM
EERRPLLDIPPLIPVNRGDAPILKSFEEPSNVANVRESSPVNACMPFDGASGNQVGPQRF
EAVSGQPVDAHFDSMGANQVENTRFDGMMGQPKNHQGPQGMQKYDGAQNQPIVSSQPVGV
KRLEGPPGQPMNAARFEGPPSQQLGAPRFEGAAGQPVGPQRFEGMQQLGPQRFEGVAGPQ
RFDGSPRPLMQQRFDGIPCQPMRFEQPMRFEASQGQQLGPVRFEGPVGPRFEVNQPQRFD
SGPGPQPLMRFDGPMGQMRPRFDGTPGNRFDNQRPHMQRFDMPGQPCQRFEGPGPGHQTP
PRFDGPMQVQPRFDGPLPQRFDGPNQQPRFELSMNHQGPRFDNIHPPVRQNAPPFGQSGP
YGEPQNHFHGQPQNMPPQGLPPQGMLPQGLPHQGMQPQGLLPQGMLPNGMQPQGMLPQGM
PPQGIPPQGMQQQGMPLQRPEQRFDLPQGPNFAGPSGPGVQCFPNQLPRPSGPYFDDKNP
KPQGPQFANFNNLPVGNLAPSQPFGPLGGMSQPAGISQPTAISQPSGMSQPAFSSQDQNY
VPPLGSAGGVFVQPGGSFPFPENHLGQLDVNELFSKLLSTGIIQKVTPNETSSTQATESS
APAAAEEEEEDADGDGDEDQDVPDLTTFQMEDLKQRYDSVINRLYTGIQCYSCGMRFTKS
QTDIYADHLDWHYRQNRTEKDVSRKITHRRWYYSLKDWIEFEEIADLEERAKSQFFEKVH
EEVILKTQEAAKEKEFLSVPAGPAGADEICEICQEQFEQYWDEEEEEWHLKNAMRMNDKI
YHPSCYEDYKNTSSFLDSTPSPSKTLLENPLNAMLNLVKEEVTEPTCSVKEEPADYTASS
CCEIPLLTEIKKEPAEPE
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggaagacgaagccagggaagacgcgcgtcgggattaccagtcgtccctggaa
gacctgacgtttaacagcaagccgcacatcaacatgctgaccatcctggcggaggagaat
gtgcagttcgccaaggatatcgtcattcttatcgaagcgcaaatcgccaaggctcgagca
accgagaagcttccagtcatgtacctaatggattccattgttaaaaacgtcgggagagac
tatctcgccgcctttgctaaaaacctagttaccacctttatttgtgtgtttgaaaaggtg
gatgaaaacaccaggaaaagtttatataagttacggtctacatgggatgaactatttcct
tcaaagaaactgtatgcacttgatgtgagagtcagccaaatagatcctgcctggcccgtt
aagcctctgcccccaaatgtgaatacttctagtatccatgtgaatcctaaattcctaaac
aaaccagaggaaagtcccccagctaaagcgtcagcgccaagccctgcgccaccccgtgct
gctaactctgaggcacaaaagcatctgtcacaagagcagctaataaggcaacaattgctg
gtgaagcagaaacagttattagaacttcaacaaaagaagttggagctcgagctagaacag
acaagagagcagctggcaacttcactttcttcttcaaaaccagttgtctcgccaaaaatt
ccacacatgccagtcaaggccccaccgcctgtttctgaaaaaagcaaagttcccgctcct
acccagcgcattgagaaatcccatgaaaagatgccagtgccaaccagagatcctcgtctt
gttaaaggaaatcagcattcagcgcacgggaaagatcaagggcacaaaaaggagatgaag
tccaacatggcctgtatgccagacctaaagcctattaaacctctgttgaatgataaagca
aatgcttctgcaaagcaagaaaaggcaaagtctaatgaaaagctacctaagcgtgaattg
gtgcaatctgagcttaaagaccgatcaaagtcaccatcacctttaaaagctaaattgtct
catatgagggataaatctcaaggcaccgagaatgtaagggacttagatataagtaggaga
gacccaaggctgcacaagcacctccgtaataaatctgacgacaaagatgctgagcccaag
gagaagcggaaatgtgacaaaaaagaggaacataaatccgagcacagagtagcgggaaac
cgaaacaaacctgtcaatgggattgtgccaaaaaacgaaaccagtacaaactatccagat
aaaacaaaacctggaagaatcggcaatagaaaaaggtcacggtcaccgaagagccgatca
ccagcccattcacctaagggtagagataggaggtcacccaaggcacggccgagaagtata
tcccctgttcattccctcccaaaaattggcagattgcgtcagcctggtagtaagcaatct
cacactgaggactttaacgcaagctctcgggaagagcggattaagaggaacgcgaaaaca
gatgcacgagacggcagaagacaaaagagactgtcggaggagaggccacaggatcctgta
tctttgatatccaataagtctaatactgagccaaaagaggatatagaaaattggcaaggg
cctaaagccaacaagcgatggaagagtggatgggaggacaataaaaactctcagaatgac
gatcatcagggtaaccggcccccttatcagaggcataatagttggcaaaacagcactaaa
ggggttgcttctccccgagctccaaagcagcagcattggttaagtgttgatgctgatctg
aaaatacctaaagaattaacaagtgcaagcaaagcagagttgctgaaaaaggcaaatgaa
cgcttttccttgggagaaatcacacacgatgagcttcttgtagtggtacatcagatccgt
cagctcttccagtaccaagaagaaaaacagagaggaagtgtgtgggatagccccactgag
gaaaataagggtgccttaaggaagaaacctctgctttccaatccagaaacaacctattat
gaacataaagcaaagctgaaaaggacacaagttcagcatgcatttgctgacagagaatat
atggatccagaatatttggacatggagctggatgaaatggcgcactctggcagagatggt
gaacttagtgggagagcggaagacaaaatgcctgaaagaaatgagcagtttcctgaaaga
caaaggctttcccccctacttgggactagacatccagatgaggatgcacatgatggctac
agaaggcatgaagatcaaagagaactttccaaaggtttacgagaagaaccgagacctttg
tttcctgaacgattcccacgctcagtccccatgtacgacgaatctgaggaggcaccttat
gaagaaaatgcagactctagaatgagtggaaacaaagctaatccaaagcttcctttgatg
gaagagagaagaccactgcttgatatcccaccactcatccctgttaacagaggagatgcc
cctatcttgaaaagttttgaagagccttccaatgttgcaaacgttagggaaagttctcca
gtaaatgcatgcatgccatttgatggtgcatcaggaaatcaggttggacctcagcgcttc
gaagcagtctcaggacagccagtcgatgcccattttgatagtatgggtgccaaccaagtc
gagaacacaaggtttgatggcatgatgggccagcctaaaaatcaccagggtccacaaggt
atgcagaaatatgacggagcgcaaaaccaacctatagtgtcaagccagcctgtgggagtt
aaaagattagagggccctcccggtcagccaatgaatgcagcaagatttgaaggcccacca
agtcaacaattaggagcgccaagatttgaaggggccgcagggcaaccagtgggccctcaa
cgatttgagggaatgcagcaattaggcccacagagatttgaaggagtggcaggtccacaa
agatttgatggctctcctagacctctaatgcagcaaaggtttgacggaattccttgtcag
cctatgaggtttgaacagccaatgagatttgaggcatctcaaggacaacagttaggccca
gtgaggtttgaaggaccggttggtccaagatttgaagtaaatcagcctcagcggtttgac
agtggacctggtccccaacccttaatgaggtttgatgggccaatggggcagatgaggccc
aggtttgatggaacacctggcaatagatttgataatcaacgacctcatatgcaaaggttt
gatatgcctggacaaccctgccagagatttgaaggcccaggtccagggcatcaaactcca
cctcggtttgatgggccaatgcaggtccaaccacgctttgatggtcctttaccacagagg
tttgatggcccaaatcagcaacccagatttgaactttcaatgaaccatcaaggaccacgc
tttgataatattcatccacccgttaggcaaaacgctccaccttttggacaaagtggtcct
tatggggaacctcagaaccatttccatggacagccacaaaatatgccaccacaaggcctg
ccccctcaggggatgctgccacaaggcctgccccatcaagggatgcagccgcagggcttg
ctgccacaagggatgctgccaaatggtatgcagccgcagggcatgctgccacaagggatg
ccgccacaaggaattccacctcagggaatgcagcaacaaggaatgccacttcagcggcct
gagcaaagatttgatttgccacagggaccaaattttgccggaccttctggtcctggggtg
cagtgttttccaaatcaacttcctagaccatctgggccttatttcgatgataagaatcca
aaaccccaaggaccccagtttgcaaactttaataaccttcctgtaggaaacttagcacca
agccaaccatttggaccattaggaggaatgtctcagcctgcaggaatatctcaacccact
gcaatatctcaaccttccggaatgtctcagccggcattttccagtcaagatcagaactat
gtccccccactggggtctgcaggaggagtgtttgtacagccaggtggttcgtttccgttt
cctgaaaatcacttgggacagcttgatgttaatgagttattctcaaagctactttcaacg
ggaatcattcaaaaagttacaccgaatgaaacctcttctactcaagcaactgaatcttct
gcacccgctgcagcggaggaagaggaggaggatgcagatggagatggagatgaagatcaa
gatgtcccagaccttaccacttttcaaatggaagacctaaaacagcgatatgacagtgtt
ataaaccgactctatactggcatccagtgctattcctgtggcatgaggtttaccaaatcc
caaactgatatatacgcagatcatctggactggcattatcgtcaaaacaggacagagaag
gatgttagcaggaagataacccaccggcgctggtactatagcttaaaggactggatagag
tttgaggagattgctgacttggaggagcgggctaaaagtcagttctttgagaaggtgcat
gaggaagtcatattaaaaactcaagaagctgctaaggaaaaggaatttctcagtgtgcca
gctgggcccgcgggggcagatgagatatgtgaaatttgccaagaacagtttgaacagtac
tgggacgaggaggaggaagagtggcatctgaaaaatgcaatgcgcatgaatgataagatt
taccatccatcatgctatgaggactataaaaatacatcgtccttcttggatagcacacca
tcccccagcaagactcttcttgaaaatccactcaatgccatgctaaatctggtcaaagag
gaggtaacggaacctacatgctctgtgaaagaggaacccgccgattacaccgcatcaagc
tgctgcgagatacctctgctcacggaaatcaaaaaagaacctgctgaacctgagtaa
DBGET
integrated database retrieval system
