Xenopus tropicalis (tropical clawed frog): 100170464
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Entry
100170464 CDS
T01011
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform 1
KO
K12821
pre-mRNA-processing factor 40
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100170464 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100170464 (prpf40a)
Spliceosome [BR:
xtr03041
]
Complex A
U1 snRNP components
U1 related factors
100170464 (prpf40a)
Complex B
100170464 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
DTW
Motif
Other DBs
NCBI-GeneID:
100170464
NCBI-ProteinID:
NP_001243869
Xenbase:
XB-GENE-988694
UniProt:
A0A8J0QGJ3
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All DBs
Position
9:75694795..75718929
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AA seq
922 aa
AA seq
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MSTSDGTNGPSQPALFPNGSRMMRGQFMNPVAHYSAVGLGGLGPRGPVGPHGMIPPLLGP
MGGPQMGQACLFQMPSMIPPLMSGMMMATHVAQGLPPSMQAGINSMEPPLVPPPVAQAVH
PIVAAQQAVSSNSTGSEEQTKLKLQWTEHKSPDGRTYYYNAETKQSTWEKPDDMKTPAEQ
LLSKCPWKEFKSDSGKPYYYNSQTKESRWAKPKELEEVEVMIKAEENSSASEEPMPVAVP
AAPTIEVNSMPTPQAIESEIAHSDPTTPAIDTETAVAETEEQPAPIASSLQEKEVEAIGN
AVTEQPPKAETPVESTPVEEKEEEKAPKKVYTWNTKEEAKQAFKELLKEKRVPSNATWEQ
AMKMIINDPRYSALAKLSEKKQAYNAYKVQTEKEEKEEARLKYKEAKESFQKFLENHEKM
TSTTRYKKAEQMFGDHEVWNAITERDRLEIYEDVLFFLAKKEKEQAKQLRKRNWEALKNI
LDNMTNVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRTLEKEEEDEKQ
KALLRERRRQRKNRESFQIFLDELHDHGQLHSMSSWMELYPTVSSDIRFANMLGQPGPGP
KTALHTQGSTALDLFKFYVEGLKARYHDEKKIIKDILRDKSFVVELSTTFDDFVTVISST
KRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIEGDSV
WEEVRERFTKEPAFEDITLESERKRIFKDFVLAIEHECQHHHSKNRKHSKKSKKHHRKRS
RSRSGSESEEEDENHTKKKRQKSDSRSGSEHSSSGESEKSYKKTKKHKKKSKKRRHKSNS
PETDGEKERDREREKKERDRDREKEKESEKDRSKRRSESKLKSPKRKGRKNSGTWDTSGS
ELSEGELEKRRRTLLEQLDDDQ
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactagtgatggtacaaatggaccaagtcagccagcattattccctaacgggtca
cgcatgatgagaggccagtttatgaatccagtcgcccactactctgctgtggggcttggg
ggcttaggtccaagggggcctgtaggaccacatggaatgattccccctttgctaggaccc
atgggaggccctcagatgggacaggcctgtctgttccagatgccttcaatgatcccccct
ctcatgtctggaatgatgatggctactcatgtcgctcaaggattacctccatccatgcag
gctggcataaacagcatggaacccccacttgtgccaccacctgttgctcaggcagtgcat
cccatagttgcagcacaacaggctgtttcatcaaacagcacaggaagcgaagaacaaaca
aagctgaaattacagtggactgagcataaatctccggacggaaggacgtattattataat
gctgaaacaaagcagtcaacgtgggaaaaaccagatgacatgaagacacctgcagagcaa
ttattatccaaatgcccctggaaggagttcaaatcggactctggcaagccgtattactac
aactcccagaccaaggagtcacgatgggccaaacctaaagagctggaagaggttgaagta
atgattaaagctgaagagaacagtagtgccagcgaagagccaatgccagttgcggtgcct
gccgcaccaaccatagaggtgaattccatgccaactcctcaggcaattgaatcagaaata
gcacattcagatccaacaacgccagccatagatacagaaactgctgttgcagagacagaa
gaacagccagcacccatcgcctcttcattacaagagaaggaggtagaggctatcggcaat
gctgtaacagaacaaccccctaaagcagaaacccctgttgaatcaactcctgtagaggaa
aaagaagaggagaaagctcctaaaaaagtttatacttggaacactaaggaagaagctaaa
caagcatttaaggaacttcttaaagaaaagcgtgttccatccaatgcaacttgggaacaa
gccatgaaaatgatcattaatgatcccagatacagtgctttggcaaagctgagtgagaag
aaacaagcgtataatgcatacaaagtgcagactgagaaagaagaaaaagaggaggccaga
ctgaaatacaaagaagccaaggagtccttccaaaagtttttagagaaccatgaaaaaatg
acctctacaacccgatacaagaaagcagagcagatgtttggagatcatgaagtatggaat
gcaattactgagagggaccggcttgagatctatgaagatgttctgttcttccttgcaaag
aaagaaaaggaacaagcaaagcagctacggaagagaaactgggaagccttgaaaaatata
ctcgacaacatgacaaacgtgacctacagcaccacttggtcggaagcccagcagtacctc
atggacaacccaacgtttgcagaggacgaggagctgcagaatatggacaaggaggatgcc
ctaatatgctttgaggaacatattcgtactttggaaaaagaagaggaagatgagaagcag
aaggctttgcttagagaaagacggcggcagaggaaaaacagggaatcttttcagatcttt
ttagatgaattgcacgatcacggtcaattgcattccatgtcgtcttggatggaattatat
ccaaccgttagttctgacataaggtttgccaacatgctgggtcaaccaggaccggggccc
aaaactgcactgcatactcaaggatccactgcgttagacctctttaaattttatgtagag
ggactgaaagcaagataccatgatgagaagaagatcataaaagatattctaagggataaa
agctttgtggtggagctcagtaccacttttgatgatttcgtcactgttatcagctctacc
aaaagggcaactacattagatgccggaaatatcaaactggcctttaacagcctactagag
aaagcagaggcccgggaacgagagcgagaaaaggaagaggcgaggaaaatgaagagaaag
gaatctgctttcaagagcatgttaaagcaagcagctcctcccattgaaggagactctgta
tgggaagaggttcgggaacggttcaccaaggagccagcctttgaagatatcacactggag
tccgagaggaagaggatatttaaagattttgtccttgccattgagcacgagtgtcagcac
catcactcgaaaaacagaaagcactccaagaagtctaaaaagcatcaccggaaaagatct
cgctcccgctctggttctgaatctgaggaggaggacgagaaccacaccaaaaagaaaagg
cagaaatcagactccaggtcggggtcagaacattcctcaagcggcgaatcagaaaaaagc
tacaagaaaacaaagaagcacaaaaagaagagcaagaagaggagacacaagtcgaattcc
ccagaaactgatggagaaaaagagagggatcgggagagagagaagaaagagagagaccgg
gacagagaaaaagaaaaagagagtgaaaaagatcgatccaagcgaagatccgaatccaaa
ttgaaatctcccaaacggaaagggagaaaaaattcaggtacttgggacacatctggaagc
gagctgagcgaaggagaactggaaaaacgcagacggactctattagaacaacttgatgat
gaccaataa
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