Xenopus tropicalis (tropical clawed frog): 100170563
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Entry
100170563 CDS
T01011
Symbol
ercc3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03022
Basal transcription factors
xtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100170563 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
100170563 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100170563 (ercc3)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100170563 (ercc3)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100170563 (ercc3)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100170563 (ercc3)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100170563 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
100170563
NCBI-ProteinID:
NP_001123812
Xenbase:
XB-GENE-1009820
UniProt:
B3DLX4
LinkDB
All DBs
Position
9:complement(86603344..86623571)
Genome browser
AA seq
786 aa
AA seq
DB search
MGKRDKADRGDKKKFKRRHYEEEDEEEEEVPGGEYQEAVPSAAGKQVDEAGTKQDEYGAK
DYRLQMPLKMDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPSHTHEYKLT
AYSLYAAVSVGLQTSDIVEYLQKLSKTGVPEGIVQFIKLCTVSYGKVKLVLKHNRYFVES
THPEVIQELLQDSVIRGCRLRDAEGNETDLITETFLSKSAISKASETAASGPSTSQVPEG
QDKTNVPADLFEFYEQMDKEEEEEEETQTVSFEVKQDNIEELQKQCIHLEYPLLAEYDFR
NDTMNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVR
KRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTK
RSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIV
DLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNP
NKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLSKPYIYGPTSQGERMHILQNFKH
NPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAF
FYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEHLAFSNKEDQQQLLQKVLA
ASDLDAEEEVVVGEFGSRSTMQVSRRVGTMSSMSGADDAVYMEYHTSRNRGASNKHVHPL
FKRFRK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagagggataaggcggacagaggagacaaaaagaagttcaagcggcgtcactat
gaggaagaggatgaagaggaagaggaggtgcccgggggcgaataccaggaagccgttcct
tctgccgcgggaaagcaagtggacgaagccggcacaaagcaggatgagtacggagccaaa
gactatcgcctgcagatgcctctgaaaatggatcattcctctcgccccctgtgggtggca
cccgacgggcacatcttcctagaagccttctcgccagtgtacaagtacgctcaggatttc
ctggtggccatatcggaacccgtgtgcagaccctcccacacccacgaatacaaactcacg
gcttattcgctgtacgcggccgttagtgtcgggctgcaaacgagcgacattgtcgagtat
ctgcagaaactgagcaaaaccggggtccctgaagggattgtacagttcattaagctctgc
actgtcagctacgggaaagtgaagctggtcctgaaacacaacaggtactttgtggagagc
acccacccagaagtcatccaagagctgcttcaagattctgtcatccgaggctgtcggctg
cgagacgcagagggaaatgaaactgacctcatcactgagacctttctgagcaaatctgca
atatccaaggcaagtgaaacagcagccagtggaccttctacatcccaggtcccagaggga
caagacaaaacaaacgtgccggctgatttatttgaattttatgaacagatggataaagag
gaggaggaggaagaagagacccaaacggtttcttttgaggtcaaacaggacaatatagaa
gaacttcagaagcagtgcatacacttggaataccctctgctggcagagtacgactttagg
aacgacacaatgaatccagacattaatattgatttaaagcctacagcggtgctgcggccc
taccaggagaagagcctgcgcaaaatgttcggcaacgggcgggcaagatctggcgtcatt
gtgcttccttgcggggccggcaagtccttggtcggcgtcaccgctgcctgtaccgttcgc
aaaaggtgcctggttctaggtaactctgccgtttctgtggagcagtggaaagcccagttc
aaaatgtggtcaaccatcgacgacagtcagatatgccgctttacctccgacgccaaggac
aagcccattggctgttccatcgccatcagcacgtactctatgctggggcacaccaccaaa
cggtcgtgggaagcagagcgcgtcatggagtggctaaaaagtcaggagtgggggttaatg
atcctcgatgaagtgcacaccataccggctaaaatgttccgtagagtcctgaccatagtc
caggcgcactgcaagctgggactcactgccacactggtacgagaagatgacaaaattgtg
gatttgaatttcctgattggtccaaaactgtacgaggccaactggatggagcttcagaac
aatggctatattgccaaggtgcagtgtgccgaggtctggtgccccatgtctcccgagttc
tacagagaatacgttgccatcaagacaaagaagcgaattctgttgtacactatgaaccca
aataaatttcgggcctgccagttccttattaagttccatgaaaggaggaatgacaagatc
attgtgtttgcagacaatgtgtttgctctcaaagagtatgccattcggctgagcaaacct
tacatttacgggcccacatcccagggggagaggatgcacattctgcagaacttcaagcat
aacccaaagatcaacactatctttatatctaaggtaggggacacgtctttcgatctgccg
gaagcgaatgtgctgattcagatctcatcccacggtgggtcgaggaggcaagaagctcag
cgtcttggaagagtcttaagagcaaaaaaggggatggtggcggaggaatacaacgccttc
ttctattcgctggtgtcccaggacacgcaggaaatggcttattccacaaaacgacagagg
ttcctcgtggaccagggttacagctttaaggtgattacgaagcttgcggggatggaggaa
gagcatcttgcattctccaacaaggaggatcaacagcaacttctgcagaaagtcctggca
gcctctgaccttgatgctgaggaggaagtggtggtcggagaatttggatccaggtccacc
atgcaggtgtccagacgcgtggggaccatgagctccatgtccggagccgacgacgcggtc
tacatggaatatcacacgtcacgaaacaggggggcgtcgaacaaacacgtgcacccactg
ttcaagcgcttccgaaagtga
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