Xenopus tropicalis (tropical clawed frog): 100170579
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Entry
100170579 CDS
T01011
Symbol
snx27
Name
(RefSeq) sorting nexin-27
KO
K17936
sorting nexin-27
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100170579 (snx27)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
100170579 (snx27)
Membrane trafficking [BR:
xtr04131
]
Protein recycling
Others
Others
100170579 (snx27)
Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
100170579 (snx27)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
PDZ_6
RA
RA_2
SNX17-27-31_F1_FERM
PDZ_2
SNX17_FERM_C
USP7_C2
RBD
SNX17-31_F2_FERM
RA_3
DUF5783
DarA_N
TetR_C_26
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
100170579
NCBI-ProteinID:
XP_031746759
Xenbase:
XB-GENE-959088
UniProt:
A0A8J1IMI6
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Position
8:complement(144695302..144715662)
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AA seq
547 aa
AA seq
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MADEDGDGIHSGQRNGGGGFGSVGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELY
APLQHVSAVLPGGAADRAGIRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELVLTVLSV
PPHEAENLDPSDDSSGQSFYDYTEKQAVPISIPTYKHVEQNGEKFVVYNVYMAGRQLCSK
RYREFAILNQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGES
DIMQEFLSESDENYNGVSDVELRIALPDKSTVTVRVKKNSTTDQVYQALTAKIGMDGITA
NYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTSEEALLKDNDL
AVSFFFHQAVDDVKRGYIKAEDKSYQLQKLCEQRKMLMYLNMLRGCDGYNEIMFPHCACD
SRRKGHVVTAISIKHFKLLACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEK
KPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEATDKDNKNCSIDSTCRKNIFHVVRL
QQKDTST
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggacggggatgggatccattctgggcagcggaatgggggcggagggttt
ggctctgtcgggggccccagggtggtccggatagtcaagtccgagtccggctatggcttc
aatgtccgcggccaggtcagtgagggcggccaactgcgcagcatcaacggggaactctat
gcgcccctccagcatgtcagcgccgtcctacccgggggagccgccgatcgagccgggatc
cgcaagggggaccgcatcctggaggtgaatggggtgaacgtggaaggggccacccacaag
caagtcgtggatctgatccgggccggggagaaggagctggttctgacggtcctgtcggtt
ccgccccacgaggcggagaatctggatcccagcgacgactcctccgggcagtcgttctac
gattacaccgagaagcaggcggtgcccatctccatccccacctacaaacacgtggagcag
aacggggagaagtttgtggtgtataacgtgtacatggccggccggcagctctgctccaag
cggtaccgggaattcgccatcctcaaccagaacctgaaacgggagtttgccaacttcacc
ttcccccggctgcccgggaagtggccattctccctatcggagcagcaactggacgcgcgc
cggaggggcctggaggagtatttggaaaaagtgtgctccatacgtgtcataggggagagt
gacatcatgcaggagttcctgtccgagtccgacgagaattacaacggggtatctgacgtg
gagctgcgaatcgccttaccggacaaatccacggtaaccgtgagggtcaagaagaatagt
acgacggaccaggtgtaccaggccctcaccgccaagattgggatggacggaattacagcc
aattactttgcactcttcgaagtcattaatcactcctttgtcaggaagttggcccccaac
gagttcccccacaagctctatgtacagaactacacctcggccgttcccgggacttgcctc
actgtcaggaaatggctcttcacaacctcagaagaggctctactgaaggacaatgacttg
gccgtctctttcttcttccaccaggcagtggatgatgtgaagcgagggtacattaaggca
gaagacaagtcgtaccagttgcagaagttgtgtgagcagcgcaagatgctgatgtacctg
aacatgttgcggggctgcgacggatacaacgagattatgttcccgcactgcgcctgcgac
tcccgccggaagggccacgttgtcaccgctattagtatcaagcacttcaagctgctggcc
tgcaccgaggaggggcagttggagaaccaggtgattgcgttcgagtgggacgagatgcag
cggtgggacacggacgaggaggggatggcgttctgcttcgagtatgcccggggggagaag
aaaccccgatgggtgaagatcttcaccccctacttcaactacatgcacgaatgcttcgag
cgggttttctgcgagctgaagtggaggaaagaggtggaagaagaggcgacggacaaggac
aataagaattgcagtattgacagtacatgcaggaagaacatcttccatgttgtacggctg
cagcagaaggacacgagcacctag
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