Xenopus tropicalis (tropical clawed frog): 100170616
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Entry
100170616 CDS
T01011
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100170616 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100170616 (exosc1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100170616 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
100170616 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
GULLO2-like_3rd
Motif
Other DBs
NCBI-GeneID:
100170616
NCBI-ProteinID:
NP_001123851
Xenbase:
XB-GENE-1007857
UniProt:
F6SHA1
LinkDB
All DBs
Position
7:32986476..32991409
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AA seq
194 aa
AA seq
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MAPVRCCVPGERLCSTEDCAPGYGTFCRHGYIFASLAGYIVKKTDNGLMPVISVVRETDS
HLLPDVGSVVTCKVTSINSRFAKVQIMYIGSTPLSNTFRGTIRKEDIRATEKDKVEVYKS
FRPGDIVMAKVISLGDIQSNYLLSTAENELGVVVAHSEAGATMVPISWCEMQCPKTHIKE
QRKVARVQPEFLQT
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgtaaggtgctgtgtgccgggtgaaaggctgtgcagcactgaagactgtgcc
cctggatatggaactttctgcagacatggctatatttttgcctccctggcaggttacata
gtgaagaaaactgacaatggcttgatgccagttatttctgtggtaagagagactgattca
catcttctgccagatgttggctctgttgtcacttgtaaggtaacaagcattaactccagg
tttgcaaaggtccaaattatgtatattggttcaactccactgagtaacacatttcgaggc
acaatcaggaaagaagacattcgtgctacagaaaaagacaaggttgaagtctataaaagc
ttccgtccaggagatatcgtaatggccaaagtgatatctttgggtgacatccagtctaat
tatctattaagcacagcagagaatgagctgggtgttgtagttgctcatagtgaagcagga
gctactatggtgccaatcagctggtgtgagatgcagtgtccaaagacgcacattaaagaa
cagaggaaagttgcacgggtgcagccagagtttctgcagacatag
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