Xenopus tropicalis (tropical clawed frog): 100170624
Help
Entry
100170624 CDS
T01011
Symbol
prdm2
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr00310
Lysine degradation
xtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
100170624 (prdm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100170624 (prdm2)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100170624 (prdm2)
Enzymes [BR:
xtr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
100170624 (prdm2)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
100170624 (prdm2)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
100170624 (prdm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2H2_11
zf-H2C2_2
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
100170624
NCBI-ProteinID:
NP_001123857
Xenbase:
XB-GENE-5957530
UniProt:
B3DM80
LinkDB
All DBs
Position
7:complement(95496867..95562925)
Genome browser
AA seq
1609 aa
AA seq
DB search
MNEDSVRSAEALETLTEVPEHIHRGLPEELSLSPSAVDSRRLGVWARRQVQRGKKFGPFL
GEKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPHKGNWLRYVNWARSAKEQNLCPLEINR
AIYYKTLKPIEPGEELLVWYNGEDNPDIAAAIEEERSASHRSKRNSPKSRRGRRKTLNGK
KKINLEKQEEKSVSDLISAKMKDSPGIPNEEDVKPLGSPILSLEQTAVIQEMVNQNVLPE
HVSISTHEVNITEEESALTEQMDFDDLHKDSSESVNQEEENGEMFEEIKSTSDETPEGSP
KKKLTAKISKPKVDVNGELTEGFMYPCQHCERKFTTKQGLERHMHIHVSTVNHAFKCRYC
GKAFGTQINRRRHERRHEAGPKRKTLIVSTSSEFGQKHIIDSLNATEENNSPRIHCKTNE
SDREMSFLSDENCESREMHPCKYCKKIFGTHTNMRRHQRRVHERHLIPKGVRRKGSLLED
PQLQTEQTPPAENIYVANTEIEEDGEADDVYIMDISNNISENLTYYIDGRIQSNSTGSSC
DVIEVETNSADVLGLNCLLTPIKVEVSQNIKPLQSVSVPDNALNDSPCCGNKEPKKRRTI
SPPLLTKIKTEVELEPITPSCSISIPLSVSVSDNLSFQKEKNVYLSSKLKQLLQMQDSNK
SQVSPSLVSEVPKSGAAVSSLSTVSNRFKRRTASPPNSPQHSPGSKEFVKQVDGKTAWTE
VLGPKVPKFESLDSSPAWSLSGKEERDSTSPLCSEELKLSKDWVSNSAFGSSFFQQPLDL
SSGVKQKSESRSQSQVTWESVLDLSVNRKAGSDSDTKEFKGSNLCIGIKKKKPTTCMLKK
VLLNEYDAIEITGENNPQSESNLHLCKSEDQRLVLDFGTSSSGEEISLPPDDPSPPPAEN
THVAVSHSPPILTSSEGHLSPTPPSFLTDATSPPSLLTTTLPSLPDSLCSVPPTPSCPSS
ISASTQSPLPVLSPTASPSPPPSPTDDPSVSASPGPPTLSSSSPTSSSSSSSSSCSSPPP
LSVASYVVSPSINSESSAVVFIKQEKIEEEVTQMKEKQSFNESFNKSFVCNVCESPFVSI
KDLAKHIFVHAEDWPFKCEFCVQLFKDVPNLSEHRLLLHGVGKIFVCSLCKKEFAFLCNL
QQHQQDLHADKEYSHQELESGALRPQNYTDPSKANAVHSESLDNDPMTPNLDDDGDLNDS
SEELYTTIKIMASGEKTKDHDIRMGLNQNYPSFKPPPFQYHNKNPMGIGATATNFTTHNI
PQTFTTAIRCTKCGKGVDNMPELHKHILVCASASDKKRYTPKKNPIPLRQTVQPKNGVVI
LEASAKNSFRHMGQPKKLNFTIEIGKLSSNKLKLSAFKKKNQLVHKAILQKNKAAKQKTG
FKANMATDPESHVCPYCNREFTYIRSLNKHASFSCPKKPASPTSKKHVSKSSKKARSTFS
SSTKKHKVSSTRRTADAEIKMQSTETNLGKTRARSLGPTPVQLPSLPNKPKQSLKYAPQV
KSKKQNVIRNSSPMRTAKNHAPHEGKKAKKAALNNLTSSIGKAPKKLHVRVQKSKLQNKS
IAKKKQSDKLYAKSRKRIGGPITRSSQQTADPVDKREDTQGKPDSRNFP
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaggattcagtaagatctgcagaagcacttgagacattgactgaagtgcctgag
cacatacatagggggcttcctgaagaactgagtctttccccctctgccgtggacagtagg
agacttggtgtctgggctagaaggcaagttcaaaggggcaagaaatttggaccatttctt
ggtgaaaaaaagaagcgctctcaagtaaagaacaatgtatatatgtgggaggtatactac
ccaaaccttggatggatgtgtatcgatgctactgatcctcataagggcaactggttgcga
tatgtgaactgggctcgctctgcaaaggaacagaatttgtgccctctagaaatcaatagg
gctatatactacaagactcttaagccaattgagccaggagaagagcttttagtgtggtac
aatggggaagacaacccagatatagcagctgctattgaggaagagagaagtgccagccac
cgaagcaagaggaactcgccgaaatccaggaggggcagaaggaaaacactcaatggtaaa
aagaagatcaacttagaaaagcaagaagagaagagtgttagtgatctcatttctgccaaa
atgaaggattcaccaggcattcccaatgaagaggatgtaaagcctctgggttcccctatt
ctttctcttgagcagactgctgtgatccaagaaatggtaaaccagaatgtccttccagag
cacgtctccatttctacccatgaggttaatattacagaagaagaaagtgctttaactgaa
cagatggattttgatgacttgcacaaagacagttctgagtcagtgaatcaggaggaggaa
aatggtgaaatgttcgaagaaattaaaagtacatctgatgaaactccagagggctcccct
aaaaagaaactaactgctaaaatctcgaaacctaaagttgatgtcaatggggaattaaca
gaaggttttatgtatccatgccaacactgtgagagaaaattcacaactaaacaaggtctt
gagcgtcatatgcatatacatgtttcgactgttaatcatgcgtttaaatgcagatactgt
gggaaagcatttggtactcagataaatcgtaggagacatgagcggcgccatgaagctgga
ccaaaaagaaaaactttaattgtatccacatccagtgaatttggtcagaagcacatcatt
gattcccttaatgcgactgaggaaaataacagtcctagaatccattgtaaaacaaatgaa
tctgatagggaaatgtcttttctttcagacgaaaattgtgaatccagagaaatgcatccc
tgtaaatactgtaagaaaatatttggaacacatacaaacatgcgtcggcatcagcgcagg
gttcatgagcgtcatcttattcctaagggtgtaaggcgaaaaggaagtctgctagaagac
ccacagttacagactgagcagacaccaccagctgaaaatatatatgttgcaaatacagaa
attgaggaagatggggaagctgatgatgtgtacattatggatatctcaaacaatatatca
gaaaaccttacttactatattgatggcagaatacagtcaaacagtaccggtagcagttgt
gatgtgatagaagtggaaactaactcagcagatgttctggggcttaattgtttacttaca
cctattaaggtggaagtttctcaaaatatcaaaccgctacagtcagtcagtgtgccagat
aatgcacttaatgactctccttgctgtggaaataaggaaccaaaaaagagaagaactata
agccctcctcttttaacaaaaataaagactgaagttgaacttgagccaataacaccttct
tgttctatcagtatcccactaagtgtatctgtgagtgataacctatcatttcaaaaagaa
aaaaatgtctatttgtcttcaaagctgaaacagcttcttcaaatgcaagacagcaataag
tctcaggttagtccctcattggtgtcagaggttcctaaatcaggagcagctgtttcctct
ttgtcaacagtgtccaacaggtttaaaaggcgtacagcttctcctcccaattctccccaa
cacagtccaggatctaaagaatttgtgaaacaagtagatgggaaaacagcatggactgaa
gtattaggcccaaaagtgccaaaatttgaaagccttgacagctctcctgcctggagttta
tctggcaaagaggagagagacagtactagtccactgtgttccgaagaattaaaattgtct
aaagactgggtgtcaaattcagcatttggtagctctttcttccagcaaccattggattta
tctagtggagtaaaacaaaaatcagaaagccgcagccagtcacaagttacttgggaatct
gtacttgatcttagtgtaaatagaaaggccggtagtgattctgacacaaaggaattcaaa
gggagtaacttgtgcattggtattaaaaagaaaaaacccaccacgtgcatgctgaaaaag
gtcctattaaatgaatatgatgcaatagaaattacaggggaaaataatccgcagtcagaa
agcaatctgcacctctgtaaatctgaagatcagagactagtgttggactttggtactagt
tcaagtggtgaagaaatatctcttcctcctgatgatccttcacctcccccagcagagaac
acacatgttgctgttagtcactcgccacccattctcacttcatcagaggggcatcttagt
cctactcctccttcatttttgacagatgcaacatcgccaccatcccttttaaccaccact
cttccttcactcccagattctttatgcagtgtgccccctacgccatcttgtccatcatcc
atctccgctagtacacagtcaccactgcctgttctttcacctactgcatcaccttcccca
cccccttctcctactgatgatccctcagtctctgcttcacctggtcctccaaccctctca
tcttcatctcccacttcatcatcttcatcctcctcctcatcctgttcatctcctccccct
ttgtctgtagcttcatatgttgtgtcaccttctataaattcggaatcttctgcagttgta
tttattaaacaagagaagattgaggaagaggtgacacagatgaaggaaaagcaatccttt
aatgagagttttaataaaagttttgtctgcaatgtttgcgaatcaccctttgtctctatt
aaagacctcgccaaacatatttttgtgcatgctgaagactggcccttcaaatgtgaattt
tgtgtacagctttttaaagatgtgccaaatctgtccgaacaccgtcttttgctacatggc
gttggaaagattttcgtttgttctttatgcaaaaaggaatttgccttcctttgtaacttg
cagcagcatcaacaagatttgcatgcagataaagagtacagccatcaagaactggaaagt
ggagctctaagaccacaaaactatacagatcccagtaaggcaaatgcagttcacagtgag
agcttggacaatgatcccatgactccaaatctggacgatgatggggatttaaatgattca
tctgaagaactatatacaaccataaaaatcatggcatcaggtgaaaaaacaaaagatcat
gatattcgaatgggtcttaaccagaactaccctagctttaagcctccaccttttcagtac
cacaacaaaaatccaatgggtattggagcaactgcaactaatttcactactcacaatatt
ccacaaacttttactactgctattcgttgcactaaatgtggaaaaggcgttgacaacatg
ccggaattgcacaaacatatattagtatgcgcttctgcaagtgacaaaaagagatacacc
cctaaaaagaatccaattcctctgagacagactgtgcagcctaaaaatggggttgtcatt
ttagaggcctctgctaaaaattcatttcgccatatgggacaacctaaaaagcttaatttt
accattgagattggtaaattatcttcaaacaagctcaaactaagtgcttttaaaaagaaa
aatcagcttgtccataaagcaatattgcagaaaaataaggctgctaaacaaaagacaggt
tttaaagcaaatatggcaacagatccggagtctcacgtttgcccttattgtaacagagag
tttacgtatatcagaagtttaaataagcatgcgtcatttagctgtccaaagaagccagcc
tcccctacttcaaaaaaacacgtttctaagtcatcaaagaaagcacgttccactttttct
tcctctaccaagaaacacaaagtcagcagcacacggagaacagcagatgcagagattaaa
atgcaaagcacagagacaaatttaggaaaaactagagcaaggagcttaggacctacacca
gttcaattaccttctctgcctaacaagcccaaacaaagtctgaaatatgcacctcaggtt
aaatccaaaaaacagaatgttataaggaactctagtcccatgagaacagccaaaaatcat
gctcctcatgagggaaagaaagcaaaaaaagcagcactgaataatttgacatcatccatt
ggcaaagcaccaaaaaaacttcatgtccgagtccagaagagtaaactgcaaaataaatcc
atagcaaaaaagaaacagtctgacaaattgtatgctaaatcaaggaaaagaattggtgga
cctatcacaagaagctcccagcagactgcagacccagtggataagagagaagacacacag
ggaaagccagattctaggaactttccttaa
DBGET
integrated database retrieval system
