Xenopus tropicalis (tropical clawed frog): 100188924
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Entry
100188924 CDS
T01011
Symbol
smarcc1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100188924 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100188924 (smarcc1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100188924 (smarcc1)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100188924 (smarcc1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100188924 (smarcc1)
PBAF complex
100188924 (smarcc1)
GBAF(ncBAF) complex
100188924 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
100188924
NCBI-ProteinID:
XP_002942764
Xenbase:
XB-GENE-5906750
UniProt:
A0A8J0QYB8
LinkDB
All DBs
Position
6:complement(7095523..7126094)
Genome browser
AA seq
1270 aa
AA seq
DB search
MKQRQVGLGLTGGCNGSNNGEGSGGRLAGPGPRHRRRRRRGGGGAAGGEREDGSPAAPAV
RDQVQSGRQYQAGSRGREEPRREPEEEDEEDGEEEEDEGDEEEEECEGEAPDEEEASRDA
DSMAAGGGASALSLARKKDGGPASKFWESPETVSQLDSVRAWIGKHYKKYVQADSPTNKA
LAVLVSQLLQFQEDAFGRHVTNPAFTKLPVKCFMDFKAGGALCHILGAAYKHRSDQGWRR
FDLQNPSRMDRNVEMFMTIEKTLMQNNCLSRPTVYLVPEIELKLANKLKDIVKRHQGAVT
EEKLKASHHVYPIPTSLDDDEWLRPVMKKDKQVQVHWGYYPDSYDTWIPASDLDADVEDA
PIPEKPWKVHAKWVMDTDVFNEWMNEEDYEVDENKKVANFRQRISLKNEEAVRSPERKEK
KAVGSAKKRKRSPSPPAAESRKKSGKKGPGGLYGKRRGQKEDDEQEDLTKDMEDPTPVPN
MEEVLLPKNVNPKKDSEHTPVKGGVVADLDEQEEETVAASGKEDEDPSRGDQSRMMDNGE
DNVTEQTNHIIIPSYAAWFDYNSIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYR
LNPQEYLTSTACRRNLSGDVCAVMRVHAFLEQWGLVNYQVDADSRPMAMGPPPTPHFNVL
ADTPSGLVPLHMRTPQVPPAQQMLNFPEKMKEKPTDLQNFGLRTDIYSKKTLAKSKAASA
GREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSSLG
PLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVREEVPLELVEAHIK
KVQEAAKALGKVDPTFGLESSCIAGTGPEEPEKQEKPSDAPEEEKMETETAEPAQQEKVT
NEVKIEKESDAESSEKPEVEKKPAEEDAEPADKEKAAEEDTEDKENESTKEADPAKKKAE
NDLSEANVAMAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELE
TIMDREKEALEQQRQQLLNERQNFHMEQLKYAEMRARQQLEQQQQQQQQQHQNAQGGSAG
PNMAHVGAPSLPGMMGHQPQQPPPYGVHHQMPPPHTSQPGQMPGPSSMMTGPPMPGRMMP
NILPPSGPHPPPPSGMAALPPGSMMASRPPMAPNGMYPGPPPPAAGAAGSSPYGRPDTPS
HGTSGHDCTVDKPLSEVLLXPTRRLTPTDFLYLSDVFLYSLPLFNLIICPIKWPVLQPLT
YFLFIPLWYL
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaggcaggtgggcctgggccttaccgggggctgcaacggcagcaataacgga
gaggggagcggcggcaggctggctggccccgggccgaggcacaggaggaggcgtcgccgc
ggaggaggaggagcggcgggcggggaacgagaggacggaagcccggcggctcctgcggtg
cgggatcaagtccagtccggccgtcagtaccaggcggggagccgcggccgggaagagccc
cgcagggaacccgaggaagaagacgaggaggacggagaggaggaggaagacgaaggggac
gaggaagaggaggagtgtgagggagaggcgccggacgaggaggaggccagtcgggacgcg
gattccatggcggcaggcggaggggcctcggcgctgagtctggcccggaagaaggacggg
ggcccggccagtaagttctgggaaagcccggagaccgtgtcccagctggactcagtacgg
gcctggatcggcaaacactacaagaagtatgtgcaagcggattccccgacaaacaaagcc
ctggctgtgctggtatctcagctgctgcagtttcaggaagatgctttcggtagacacgtt
accaaccctgccttcactaaactgcctgtaaagtgcttcatggatttcaaagcaggcgga
gctctatgtcacatactgggggctgcttacaaacacaggagcgaccaaggatggagaagg
ttcgacttgcagaatccctcgaggatggatcgcaatgtggaaatgttcatgactatagaa
aaaaccttgatgcagaacaactgcctgagcaggccgaccgtctacctcgttccagaaatt
gaactgaagctggcgaataaattgaaagatatagtgaaacgccatcagggagcagtgaca
gaagagaagctaaaggcctcccatcacgtgtaccctattcctacctcactggatgatgat
gaatggctaagaccggttatgaaaaaggataaacaagttcaagtgcactggggatactat
cccgatagctatgatacctggattcctgcttcagatttagatgcagatgtggaagatgca
cccattccagaaaaaccatggaaagttcatgcaaagtgggtcatggatactgatgtattt
aatgaatggatgaacgaggaagactatgaggttgatgaaaacaagaaggtggctaatttc
cgccaaaggatctctttaaagaatgaagaggctgtgcgcagtcccgagaggaaggagaaa
aaggctgttggaagcgctaaaaagagaaagcgctctccttctcctccagcagctgaatct
agaaagaaatcaggcaagaaaggcccgggcggtctgtatggtaagcggagaggacagaag
gaggatgacgagcaggaggatcttacaaaggatatggaggacccaacgccagtcccaaac
atggaagaagtgttgctcccaaaaaatgtaaacccaaagaaggacagtgagcacacacct
gtaaagggaggagtagttgcagaccttgatgagcaggaggaagagacagttgctgctagt
ggaaaggaagatgaagaccccagcaggggagatcagagcagaatgatggacaatggtgaa
gataatgtgactgagcagacaaaccacataatcattccaagctatgcagcttggttcgac
tataacagcattcacgtgatcgagcgccgagcccttccggagtttttcaatggaaagaat
aaatcaaagacaccagagatatacctggcctaccgaaactttatgatagacacgtatcgg
ctgaacccacaggagtatctgacaagcacagcttgccggaggaacctcagtggagatgtc
tgtgcagtgatgagggtgcatgcgtttctagagcagtggggtcttgttaattaccaagtg
gatgcagattcacgacctatggcaatgggcccaccaccaactcctcacttcaacgtgctg
gctgataccccctctgggctggtacctctgcatatgaggactccacaggtaccccctgct
cagcagatgctgaatttcccagaaaaaatgaaagagaagccaacagacttgcaaaacttt
ggcttacggacagatatctattcgaagaagactttagcaaagagtaaagctgccagtgct
ggaagggaatggaccgaacaggagactctgctgctcctagaggccctggagatgtacaaa
gacgactggaacaaagtgtccgagcacgttggaagccgcactcaggacgaatgcatccta
cacttcctcaggcttcctatcgaagatccctacctggagaattcagactcctctctggga
cctctggcctaccagcctgttccattcagccagtcgggcaaccctgttatgagtaccgtg
gcctttcttgcttccgtggtggatccgagagtggcagcggccgctgctaaagctgcttta
gaggagttttcccgggtgcgggaggaagtgccgctggagctggtggaggctcacatcaaa
aaagtgcaagaagcagccaaagctcttgggaaagtggatccaacgtttggcttggaaagt
agctgtatagcgggcactgggccggaggagccagagaagcaagagaagccttccgatgcc
cctgaagaggaaaagatggagactgaaacagctgaacctgcacagcaggagaaagtgact
aatgaggttaaaattgaaaaggaaagtgatgcggagagcagcgagaaacccgaagtggag
aagaagccggcggaagaggatgctgagcctgcagataaagagaaagctgcggaggaagac
actgaagacaaagagaatgaatccacgaaggaagccgaccctgcaaagaagaaagcagag
aacgatctctccgaggctaatgtggcaatggctgcggccgctgctttggcttctgcggcc
acaaaggccaagcatctggcagcagtggaggaacgtaagatcaagtccctggtggctttg
ttagtagaaactcagatgaagaagctggagatcaagctgaggcattttgaagaacttgag
accatcatggacagagaaaaggaagcactggaacaacagaggcagcagctcctcaacgag
cgtcagaacttccacatggagcagctgaaatatgccgagatgagagccagacagcaactg
gaacagcagcaacagcaacagcagcagcaacaccagaacgcccaaggcgggtctgcaggg
cccaacatggctcatgtaggagcaccgagccttcccggaatgatgggccaccaaccgcag
cagcctcctccatacggggttcaccatcagatgcctcctcctcacacctcacagccaggt
cagatgccggggccaagttccatgatgactggacctcccatgccaggccgcatgatgcct
aatattcttccacctagtgggcctcacccgccgcccccttctggtatggctgctctgccc
cccggcagtatgatggcatcccgcccacccatggcacctaatggcatgtatcccggcccc
ccaccaccagccgcaggcgcagccggctcctccccctacggacggcccgacaccccctcc
catggcacctccggccacgactgcaccgtagataaaccactcagcgaagtacttttanac
cctacgaggagactgaccccgactgactttttgtatctgagtgatgtgtttttatacagc
ctccctctgtttaatctcattatttgcccaattaaatggccagttcttcagccactcaca
tatttcctttttattcctctctggtatttatag
DBGET
integrated database retrieval system
