Xenopus tropicalis (tropical clawed frog): 100216120
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Entry
100216120 CDS
T01011
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100216120 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100216120 (dhx15)
03009 Ribosome biogenesis [BR:
xtr03009
]
100216120 (dhx15)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100216120 (dhx15)
Spliceosome [BR:
xtr03041
]
Complex A
U2 snRNP components
U2 related factors
100216120 (dhx15)
Complex B
100216120 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100216120 (dhx15)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
90S particles
Helicases
100216120 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Atrophin-1
SRP54
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
100216120
NCBI-ProteinID:
NP_001135571
Xenbase:
XB-GENE-1008945
UniProt:
B4F700
LinkDB
All DBs
Position
1:complement(31415587..31436512)
Genome browser
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYVANKKRSSDGKDRDRERDDRSKDRDRDRDRDRERDRDKDKDSRGSSN
STYITASGMPPLKPAAVAQGINPFTNLPHTPRYYDILKKRLLLPVWEYKERFTEILMKNQ
SFVLVGETGSGKTTQIPQWCVDYMRLLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVVILDEAHERTLATDILMG
VLKEVVRQRNDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREIDDLGPDVGDIKIIPLYSTLPP
QQQQRIFEPPPPKKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCDYNCSNEILSITAMLSVPQCFIRPTEVKKAADEAKMRFAHIDGDHLTLLNVYHAF
KQNHESSQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALV
TGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAAQYYDMSNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggcaccggctggacctaggggacgactatgtggcgaacaagaaaagaagc
agcgacggaaaagacagagatcgagagagagatgaccgatctaaggaccgggaccgtgac
agagatagggatcgggaaagggacagagacaaggataaagactcacgtgggtcatccaat
tctacgtatattacagctagtggaatgccacctctaaaacctgcagcggttgctcaaggc
attaatccctttaccaacttaccccacactccgcgctactatgacatcttaaaaaagagg
ctactgttgccagtatgggaatacaaagaacggtttactgaaattcttatgaagaaccag
agctttgtattggttggtgagactggatctgggaaaactactcagattccacagtggtgt
gtcgactacatgaggttattgcctggtcccaaaagaggcgttgcatgtacccagccaaga
agagtggctgccatgagtgtggctcaaagagttgcagatgaaatggatgtcatgttgggt
caggaagttggttattccattaggtttgaagactgcagcagtgcaaaaacaatcttgaag
tacatgacagacggtatgttactccgggaagctatgaacgatccattgttggaacgctat
ggggtagtgattcttgacgaagctcatgaaaggaccttagcaacagatattctaatgggt
gttttaaaggaagttgtaagacaaaggaatgacttaaaggttatagttatgagtgccact
ttagatgctggcaaattccaggtatattttgatagctgccctcttttaacaatccctgga
cgaacacaccctgtagaaatcttctatactccagagcctgagcgggattacctagaggca
gccattcgaacagtgattcagattcacatgtgtgaagaggaggaaggagatctcctgctt
tttcttactggacaagaggaaattgacgaggcctgcaagagaatcaaacgggaaatcgat
gacttgggccctgatgttggagacatcaaaatcattcctttatattcaaccctcccacct
cagcaacagcaaagaatatttgagcctcctccacccaagaaacctagtggagcaatagga
aggaaagttgtagtttccactaacatcgctgaaacatctctgactatagatggtgttgtg
tttgtgatcgatcctggctttgccaagcaaaaggtgtataaccctcgaattcgagtggaa
tctctcctggtgactgccatcagcaaagcttcagcgcagcaaagagctggtcgtgcaggt
cgtacccggcctggcaagtgcttccggctttatacagaaaaggcttacaaaacagaaatg
caggacaatacttaccctgaaatattgaggtccaatttgggttccgtagtattgcagtta
aagaaacttggcattgatgacttggttcattttgatttcatggaccctccagcgcctgaa
actttaatgcgtgccctggagcttttgaactacctggctgccttaaatgacgacggagac
ctgacagaattgggatctatgatggcagagttcccactggacccacagctggccaagatg
gttattgccagttgtgactacaactgctctaatgagatcttatccataacagccatgttg
tcagtcccacagtgtttcattcgacccacggaagtcaagaaagctgccgatgaggctaag
atgaggtttgcccacatcgacggtgatcatttgacgctgctgaatgtataccatgctttc
aagcagaatcacgagtcgtctcagtggtgttatgacaacttcattaactacagatccctg
atgtctgcagacaatgtacggcagcagctgtcacgaatcatggacagatttaacttgccg
cgaagaagcacagactttacaagccgagattattacattaatattaggaaagctttggtt
actggttattttatgcaggtggcacacttggagcgaactggtcactatctaacagtgaaa
gacaaccaagtggtacagttgcacccgtcaaccgttcttgaccacaaacccgagtgggtc
ctgtacaacgagtttgtcctcacaaccaagaactacatccgcacatgcacagatataaag
cctgaatggttggtgaaaattgcagctcaatattacgacatgagcaactttcctcagtgt
gaagcaaagaggcaactggagcgcattgtggccaaacttcagactaaggaatattcacag
tactga
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