Xenopus tropicalis (tropical clawed frog): 100216139
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Entry
100216139 CDS
T01011
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100216139 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100216139 (taf5)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100216139 (taf5)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100216139 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
100216139 (taf5)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
100216139 (taf5)
STAGA complex
100216139 (taf5)
TFTC complex
100216139 (taf5)
SAGA complex
100216139 (taf5)
SLIK complex
100216139 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_WDR19_1st
WD_LRWD1
PEP5_VPS11_N
Beta-prop_DCAF12
CDK5RAP3
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
100216139
NCBI-ProteinID:
NP_001135586
Xenbase:
XB-GENE-1004611
UniProt:
B4F725
LinkDB
All DBs
Position
7:complement(28599187..>28609851)
Genome browser
AA seq
777 aa
AA seq
DB search
MAAVPDEASVVVKAEPEVQDEAKPDISGCVDGNAQALGNGAPPSPSSPQAAPPVPPGVAA
PPAAAAPAPGSDASDRQTLLAVLQYLKKRKLKDSADILLRESGLFDSDELLALTSLSPDR
AGAGDGADTTLLSRVSGAAGSDISASAGGAASSSASSACAGKVTLNNGPQDQPDVSAVLS
AYTQQGDPALYEEYYSGLKRFIESVLDCHRAELSQLFYPLFVHMYLELVYNQHEQKAKSF
FEKFHGDQECYYEDDLRILASLSKKGHMMGNETILDFRTSKFVLRISRDSYQLLKRHLQE
RQNNQIWSIVQEHLYIDIFDGMPRSKQQIDAMVGSLSGEAKREANKAKIFFGLLKEPEIE
VPLDDEDEEVENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMI
MKETAKRVRLGQDSLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSLTPKK
LRSVKSASDLSIIDKESDDVLERIMDEKSSSEMKVLYGHSGPVYATSFSPDRNYLLSSSE
DGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIF
AGHLADVICTRFHPNSNYIATGSTDRTVRLWDVLNGNCVRIFTGHKGPIHSLAFTPNGKF
LATGASDGRVLLWDIGHGLMVGELKGHTNTVYALRFSRDGEILSSVSMDNTVRLWDTVKA
FEDLDTDDFTSSAGHINFHENSQDLLLGTFMTKSTPVIHLHFTRRNLLLAAGAYTPQ
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggtgccagatgaggcgagtgtggtggtgaaggcagagcccgaagtgcaggac
gaggcgaagcctgatatatcggggtgcgtggatgggaatgcacaagcgctgggaaatggc
gctccgccgagtccttctagtccccaagccgctcctcctgttcccccgggggttgcggct
ccgccggctgcagctgccccagcgcccggctccgatgcctctgaccgccaaacgctgctg
gccgtgctgcagtacctgaagaagcgcaaactcaaggactctgccgatatcctcctcagg
gagagcggattgttcgactcggacgagctgctcgccttaacatcgctcagccctgatcgc
gccggggcaggggatggagccgacacgaccttgctgagccgggtgagcggcgcggcggga
tcggacatctcggcttctgccggcggtgcggcttctagtagcgcatcttctgcctgtgcg
gggaaagttactttaaataacggccctcaagaccagccagatgtcagcgcagttttgtct
gcttacacccaacaaggagatccggccctctacgaggagtactacagtggcctgaagcgc
tttatagagtctgtgctagactgccatcgggcagaactatcccaactcttctacccactc
tttgtacacatgtaccttgagctagtatacaatcagcatgaacaaaaggcaaaatcattt
tttgaaaagtttcacggagatcaggaatgctattatgaagatgatctgcgcattctagcc
agcctctcgaagaaagggcacatgatgggcaacgagaccatccttgacttccgcaccagc
aagtttgtgttgcgaatatctcgtgactcctaccagctgctgaagaggcatttacaggag
cggcagaacaaccagatctggagcatcgttcaggagcacttgtacattgacatctttgat
gggatgccgcgcagcaagcaacagattgatgctatggtgggcagtctgtctggggaagca
aaacgagaagctaacaaagcaaagatattttttgggcttctgaaagagccagaaatagaa
gtccctttggatgacgaggatgaagaagtggagaatgaagaagggaagccaaaaaagaaa
aagcctaaaaaagataacgttggctctaaaagcaagaagcaggatcctaatgctccgcca
caaaacaggattccacttccagaactaaaggactctgacaaacttgataaaatcatgatc
atgaaagaaactgcaaaacgagtgaggctaggccaagactctctgccctccatttgtttc
tacacgtttcttaatgcctatcagggcctgacggcagtggatgttactgatgattccagc
ctcatagcaggaggatttgcagactccacggttcgcgtttggagccttacccctaaaaag
ttgcggagtgtcaaatctgcatctgatctgagcatcatagacaaagagtcagatgatgtt
ttagaaagaatcatggatgaaaagtcctcaagcgagatgaaggttttatatggtcacagt
ggtcctgtttatgctactagcttcagtccagacaggaattacttgttatccagttctgaa
gatggcactatccggctatggagtcttcagacatttacatgcttagtggcttacaaaggg
cacaattacccagtttgggacacacagttctctccttatgggtactactttgtatcagga
ggccacgatagagttgcacgtttatgggctacagatcattatcagcctttaagaatattt
gctggccatcttgctgatgtcatatgtacacggtttcacccaaactccaactatattgcc
actggctcaacagacagaactgtaagattgtgggacgtactaaatgggaactgtgtaagg
atctttacaggacataagggaccaatccattcactggcattcacgccaaatggaaagttt
cttgcgacaggagcgtcggatggcagagttcttctgtgggacattggccatggtttgatg
gttggagagctaaagggtcacacaaacacagtctatgcacttaggtttagcagagatggg
gagattttatcatcagtttcaatggacaatactgttcgattgtgggatacagtaaaggcc
tttgaagacttagacactgatgactttacaagttctgctgggcatataaacttccatgaa
aactcacaagacttactgctgggtacctttatgaccaaatcaacccctgtcatacatctc
catttcacaagacgaaacttgctccttgctgcaggagcttacacaccacaatga
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