Xenopus tropicalis (tropical clawed frog): 100216162
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Entry
100216162 CDS
T01011
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100216162 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100216162 (xab2)
03041 Spliceosome [BR:
xtr03041
]
100216162 (xab2)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100216162 (xab2)
Spliceosome [BR:
xtr03041
]
Complex B
Other components
Prp19-related factors
100216162 (xab2)
Complex C
100216162 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_15
TPR_8
TPR_19
TPR_2
ARM_TT21
RPN7
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
100216162
NCBI-ProteinID:
NP_001135604
Xenbase:
XB-GENE-1009276
UniProt:
B5DDV4
LinkDB
All DBs
Position
3:132585464..132596596
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AA seq
839 aa
AA seq
DB search
MPDQHLLIEEDDLQYEEEILCNPYSVKCWMRYLENKLSGPSQALNLVYERALKELPGSYK
LWYAYLKQRRRQVKRRCVTDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCKITRT
RRTFDRALRALPITQHHRIWPLYLRFVRAHPLPETAVRVYRRYLKLSPENAEEYIEYLRS
IDRLDEAASRLATIVNQDGFVSKEGKSNYQLWQELCTLLSQHPGSVRSLDAAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEESIQTVTTVRDFTQVFDSYAQFEESVIAA
KMETVSDLGKEDDDDLDLELRLARFEQLIERRPLLLNAVLLRQNPHNIHEWHKRVQLYQD
KPHEIINTYTEAVQTVNPAKATGKPHSLWVAFAKFYEDNGQIEDARAILQRATLVQYTHV
DELASVWCQFGEMELRHENYEQALNILRKATAVPARKAEYFDSSEPVQNRLYKSLRVWSM
LADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQSLDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVETGEQYEMFNIYIKRAAEIYGVTHTRSIYERAIELLTDEQSREMCL
RFADMECKLGEIDRARAIYSYCSQMCDPRLTAGFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQKLRAAEGGASEGINEPADEMQALEQRAAVIAAEAEKDKPQMKEKI
LFVRSDASRSELAELTRQSNPDEINIGEDDESEEELEPDEVQLEQKSVPASVFSGISDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgccggatcaacacttattaatagaggaagatgacttgcaatatgaagaggaaatccta
tgcaacccctattcggtcaagtgctggatgcgctacctagagaacaagctttctggccca
tcgcaggcactcaacctggtgtatgagagagcactgaaggagctgccgggaagctacaag
ctttggtacgcttacttgaagcagcggcgcaggcaagtcaagaggagatgtgtcaccgac
ccggcctttgaggaagtgaataactgccatgagcgagccctcgtcttcatgcacaagatg
cccaggatctggttggattattgccagtttcttatggatcagtgtaaaattacccgcacc
aggaggacgtttgatcgagcgttgcgcgcactacccatcacacagcaccaccgcatctgg
cccctctacttgcgttttgtaagagcccatccactgcccgagaccgctgtcagggtgtat
aggagatatctcaagctgtcaccagagaatgcagaggagtatatagagtacctccgttcc
attgacagactggatgaagcagcttcccgactggcaactattgtaaatcaagatggcttt
gtctccaaggaagggaagtccaattaccagctgtggcaggagctgtgcacacttctctcc
cagcatcccggctctgttcgatcattggacgctgcagccattattagagggggacttacg
cgatttacagaccagaggggcaagctgtggtgcgccctggctgaatatcacactcgcagt
ggccactttgagaaggcgcgagatgtctatgaggagtcaattcagacagttacgacggtg
cgagacttcactcaagtgtttgacagctatgctcagtttgaagagagcgtcattgctgct
aagatggagacagtcagtgatctgggtaaagaagacgatgatgacttggatcttgaactg
agactggctcgtttcgagcagctgatagaacgcaggccgctcttactcaatgctgtgtta
ctgcggcagaacccacacaatatacatgagtggcacaagcgggtacaactataccaagac
aagcctcacgagataataaacacgtacacagaagctgttcagactgtgaatcctgcaaaa
gcaactgggaaaccgcacagtctctgggtagcattcgctaaattctatgaggacaatggg
cagatcgaagatgctcgggccatcctacaaagagcaaccttggtacagtacacacatgtg
gacgagttggcctcagtctggtgccagtttggcgagatggaactgagacatgagaactat
gaacaagcgcttaatatactacggaaagctacagctgtgccagcacggaaggctgaatat
tttgattcatcagagcctgtccagaaccgattgtacaagtccctgcgagtctggtccatg
ttggcagacttagaggagagtctgggcacttttaagtccacgaaagccgtgtacgatcgg
ataattgacctgcgcattgcaacgccacagattatcatcaattatgctttgttcctggag
gagcacaactacttcgaggagagttttaaggcctatgaacgtggtatcgccttgttccgg
tggcccaatgtctatgacatatggagtacttacctctccaagttcattgctcgttatgga
gggaaaaagctggagcgagctcgggatctgtttgagcaatccctggacggctgcccgcgc
aagtttgccaaaaatattttccttctctacgccaaactggaagaagagcatggattagcc
cgccatgccatggccttatatgagcgagcaacccaggctgtggagacaggggaacagtac
gagatgttcaatatttacatcaagagagctgcagaaatctacggggtcacccacacacgc
agtatctacgagcgcgccattgagctgttaactgatgagcagtcccgggagatgtgcttg
cgatttgccgacatggagtgcaaactgggagagattgacagagccagagccatctactcc
tactgctcccagatgtgtgatccgcggctcacagctgggttctggcagacatggagggac
tttgaagtgcggcacgggaatgaagacactctgagggagatgttgcgtgtgaaaagaagc
gtgcaggccaagtacaacactcagggcacattccttgtgtcccagaaactgcgagcagca
gaaggaggagccagcgaagggattaatgagccagcagatgaaatgcaggcgctggagcag
agagcagcggtcattgcagctgaggctgagaaagataagcctcaaatgaaggagaagatc
ctatttgtcaggtcagacgcctcccgctcagaactggcagagctaacgcgtcagtccaat
ccagacgagattaacataggggaagacgacgagtcggaggaggaacttgagccggacgaa
gttcaactcgagcagaaatctgttccagcctctgttttctctggcattagcgacgactga
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