Xenopus tropicalis (tropical clawed frog): 100216177
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Entry
100216177 CDS
T01011
Symbol
smg9
Name
(RefSeq) protein SMG9
KO
K18735
protein SMG9
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100216177 (smg9)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100216177 (smg9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
DUF6079
NB-ARC
AAA_18
AAA_14
Motif
Other DBs
NCBI-GeneID:
100216177
NCBI-ProteinID:
NP_001135618
Xenbase:
XB-GENE-990837
UniProt:
B5DDX6
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Position
7:119938638..119951302
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AA seq
508 aa
AA seq
DB search
MSDSGHSQPNVFIPGRNRRRRWMDQGPPGHLNLSEPGREKDPMLRDRDQDRWEGNEEGYG
YTIQKTPIILAKPTSDRTKAATPAAPPPMEKPIVLMKAREDGKPAAPAEGATAPPPTAVA
KVEKEGQRPTQPVYQIQNRGMGAAASASGNVDPVVGQAKLLPPQKMKHSIKLVDEYMNWC
DSAIEFLLDQTDVLVVGILGLQGTGKSTLMSLLSANSPDDDQRSYVFRMQSQEVRERAGN
QTSGIDFFISQERIIFLDTQPILSPAILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFL
FTVCHVVIVVQDWFTDFNLYRFLQTAEMLKPSTPSPSHESSGSSGSDEGIEYYPHVVFVQ
NKAKREDYCPRTLKQMHTVIDKLMLHSHLRYKGTLSMLDCNIFPGLPYDFIESEVNLFLI
PTMESDVDETISRAGTSGIPLFSLLPAYKGHPSFHSLISRLRSQIMSMSRPQLSHTILTE
KNWFHYAARIWDGVKKSSALSEYSRLLG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactcaggccacagccagcccaatgtgtttatccctgggcgcaacagaaggcga
cgctggatggaccaaggaccgccgggacaccttaacctctcggaacctggacgagagaaa
gaccccatgctccgggacagagatcaggatagatgggagggaaatgaagagggctatggc
tacaccattcagaaaactcctatcatccttgcaaagccaacctccgacaggacaaaggcg
gcaaccccagcggcacctcctcctatggaaaaacccattgtcctgatgaaagccagggaa
gatggaaaaccagcagcccctgcagagggtgccaccgcaccccctcccactgcagtagca
aaggtggagaaagagggacagcgacccacccaaccagtatatcaaatacagaaccggggc
atgggagccgcagcaagtgccagtggcaatgtggatcctgtggttgggcaggccaagctg
ctgccacctcagaagatgaaacacagcatcaaattggtggatgaatacatgaactggtgt
gacagcgctattgagttcctgctggaccagacagatgtccttgtggttggcatcctagga
ttgcaaggcacaggaaagtccaccctgatgtccctgttgtcagcaaactctccagatgat
gaccaaaggtcttacgtgtttcggatgcagagccaggaagtgagggaaagagctgggaac
cagactagcggcattgacttcttcattagccaggagaggatcatcttcctcgatacccag
ccaattctcagtccagcgatactggatcatctgatcaataatgaccgaaaactaccccca
gaatacaatctcccccacacctatgttgagatgcagtctctgcagatcgctgcctttttg
ttcacggtttgtcacgttgtcatcgttgtacaggattggttcacagacttcaatttatac
cgcttccttcagacagccgaaatgcttaagccatcaactccctcccccagtcatgagtca
agtggctcttctggctctgatgaaggcattgagtattatccacatgtagttttcgtgcaa
aataaagccaagagggaggattactgtccccgcaccttaaagcagatgcacacagtcatt
gataaactcatgctccattcacacctgcgatacaaaggcactctttccatgctggactgc
aacatcttcccaggtctgccctatgactttatcgagtcagaagttaacttattcttgatc
ccgaccatggagagtgacgtggatgagacaatatccagggcaggcaccagtggaatccct
ctcttctccctcctgccggcatacaaagggcatcccagttttcattccctgatcagcaga
ctgcgcagccagatcatgtccatgtcacgccctcagctctctcacaccatcctgaccgaa
aagaactggttccactatgctgcccgaatttgggatggtgtaaagaagtcatcagcactt
tcggagtacagcaggttactgggctaa
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