Xenopus tropicalis (tropical clawed frog): 100216188
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Entry
100216188 CDS
T01011
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140
Autophagy - animal
xtr04148
Efferocytosis
xtr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100216188 (vps39)
04148 Efferocytosis
100216188 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100216188 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100216188 (vps39)
Membrane trafficking [BR:
xtr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100216188 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNH
Vps39_1
Clathrin
WD40_like
Beta-prop_RIG_2nd
TreT_GT1
Motif
Other DBs
NCBI-GeneID:
100216188
NCBI-ProteinID:
NP_001135629
Xenbase:
XB-GENE-982373
UniProt:
B5DE07
LinkDB
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Position
8:113990794..114021013
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AA seq
664 aa
AA seq
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MHDAFEPVLILEKLPLQIECLAAWEEWLLVGTKQGHLLLYRVKKEQGCNQFEVTLEKSNK
NFAKKIQQIHVVPQFKILVSLLDNNVCVHDLLTFQLITTISKAKGASLLSCHLQKSRPGE
EVLKMCVAVKRKLQLYFWKDRAFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLAVPLQDGKVAVGQDDLTVVLNEEGTCTPKCALNWTDIPMAME
HQPPYIIAVLPRYVEVRTFEPRLLVQSIELQRPRFVTSGGPNIVYVASNHFVWRLVPVSI
ATQIQQLLQDKQFELALQLARMKDDSDGEKLQQIHHIQNLYAFNLFCQKRFEESMQGFAK
LGTDPTHVIGMYPDLLPSDYRKQLQYPNPVPALSGAELEKASLALIDYLTQKRSHLVKKL
NDSDHQSTTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNGALVASLLRLENNHCHVEE
SEHVLKKAHKYSELIILYEKKGLHDKALQVLLDQSIKANSPLKGHERTVQYLQHLGEENI
SLIFAHCSWVLRIHPVDGLKIFTEDLPEVESLPRKPVLDFLLANHIDLAIPYLEHVILTW
EDQFPEFHNCLIKLYCEKVQKLMKDPPTGTGSVLKSMKWGKMVRYLIKKRQISRKKSAEN
SWIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctttgagcctgtactgatactggagaaacttcccttacagatcgagtgc
ctggcagcctgggaagaatggcttctcgttggaactaaacaaggacacctgctgctatac
agggtcaagaaggaacaaggctgcaaccagtttgaagtgactttggagaaatcaaacaag
aactttgccaagaaaattcagcagattcatgttgttcctcagtttaagattctggtcagt
ttgcttgataataatgtttgcgtgcacgacttgttaactttccagttaattaccacaatt
tcaaaggcaaagggagcttcactgttgtcttgtcacctccagaagtccagacctggagag
gaggtgttgaagatgtgtgtggctgtcaagagaaaactgcagttatatttctggaaagac
cgagccttccatgagctacagggtgactttagtgttccagatgttcccaaatctatggca
tggtgtgagaactcaatctgtgtgggatttaaacgggattattacttgatcagggttgat
gggaaaggctccattaaagagcttttccccacaggcaagcagctggagccactggcagtg
ccactgcaggatggaaaggtggccgtgggacaggatgacttaacggtggttttgaacgag
gaaggaacgtgtactccaaaatgtgctctgaactggactgacatcccaatggcaatggag
catcagcctccatatataattgccgttttgccccggtatgtggaagtccggacatttgaa
ccacggctgttggtacaaagcattgagttacaaagacctcgttttgttacatctggagga
cccaatattgtatatgtggccagcaatcactttgtctggaggttggttccagtgtccatt
gccacacagatacagcagctgttacaggacaagcagtttgaactcgcactgcagttagcg
agaatgaaggatgactcagatggagagaagctacagcaaatccatcacatccagaatctg
tatgcttttaatttattttgccagaaacgttttgaagaatccatgcagggttttgccaag
cttggaacagatcctacccacgttatcggaatgtacccggatctgctaccttctgattac
aggaagcagcttcagtaccctaaccctgttcctgccctatctggagcagagctagaaaag
gccagcttagcacttatagattacttgacccagaaaaggagccacctggttaaaaagttg
aatgactctgaccaccaatccaccacgtctcctctgatggaaggaactccaaccatcaaa
tccaaaaaaaagctcctgcagattatagataccactctacttaagtgctacttgcatact
aacggggccctggtggcatcactcctgcgactggagaacaatcactgccatgttgaggaa
agtgaacatgtcctgaagaaggcacacaagtacagtgagctaatcatcctttatgaaaag
aaggggctgcatgacaaggcattacaagtcctacttgatcagtcaataaaagccaactcc
ccactgaagggccatgaaaggacagtgcagtatctacagcaccttggggaggagaatatt
tctctgatttttgcacattgtagctgggtactgcggattcatccagtggacggacttaag
attttcacagaggatctgcctgaagtggaaagtctccctcggaagcctgtcctagatttt
ttattggcaaaccacattgatttggcaattccatacttggagcatgtcatcctgacatgg
gaagaccagtttccagaattccacaattgtttaattaaactttattgtgagaaggttcag
aaattgatgaaagatccgccaacaggtacaggatctgtcctgaaatcaatgaagtggggg
aagatggttcggtacctgataaaaaagaggcagataagccggaagaaatccgcagaaaac
tcttggatttcttag
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integrated database retrieval system
