Xenopus tropicalis (tropical clawed frog): 100216235
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Entry
100216235 CDS
T01011
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100216235 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
100216235 (copb1)
Membrane trafficking [BR:
xtr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
100216235 (copb1)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
100216235 (copb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT_2
HEAT
Cnd1
HEAT_EZ
Arm
MMS19_N
CRAL_TRIO_2
Motif
Other DBs
NCBI-GeneID:
100216235
NCBI-ProteinID:
NP_001135674
Xenbase:
XB-GENE-975104
UniProt:
B5DEA8
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All DBs
Position
4:3434538..3452365
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPMDSEPPSEIILKADLEKGDVKSKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLVELKDHPSHERVLQDLVMDILRVLSTPDLEVRKKTLQLALELVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADV
LEFVREAVQRFDNLRPLIVEKMLEVFHAIKSVKIYRAALWILGEYCSTKEDINSVMTEVR
RSLGEVPIVETELKKESGELKPEEDVTVGPTQKLVTEMGTYPTQSALSSSRPAKKEEERP
PLRGFLLDGDFYVAASLATTLTKIALRYVALVQEKRKQNSFVAEAMLLMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNEIFNKECRQSLSHMLSAKLEEEKLSQKKESEK
RNVTVQPDDPISFMQLTAKNETASKEDQFQLSLLAAMGTTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTGDTLQSCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDTEF
RQMWAEFEWENKVTVNTNITDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKSCI
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagccgagaatgtgtgttacactctcattaacgttccaatggactcggaacct
ccatccgaaattattctgaaggcggacttggagaaaggagatgtgaaatccaagacggag
gccctgaagaaagtgatcatcatgatcctgaatggagagaagctgccggggctgctgatg
accatcatacggttcgtgctgccgctgcaggatcacaccatcaagaagctgctcttggtc
ttctgggagattgtgcccaagaccacgcccgacgggaaactcttgcaggagatgatcctc
gtgtgcgacgcctacaggaaggatctccagcaccccaacgagttcatcaggggatctaca
ctacgcttcctgtgcaaactgaaagaggcggagcttctggagcccctgatgccggcgatt
cgggcctgcctggagcaccgccacagctacgtgcgtaggaacgcggtgctcgccatctac
accatctacaggaacttcgaacacctgatcccggatgctccagaactgatccacgatttc
ctggtgaacgagaaagatgcgagctgcaagcgcaacgccttcatgatgctcatccatgcc
gatcaggaccgggccctggattacctgagtacctgcatcgaccaagtgcagacgtttgga
gacatcctgcagttggtcatcgtcgagctcatctacaaggtttgccatgccaacccctcc
gagagggctcgcttcatccggtgcatctacaacctgctccagtcgtccagtccggccgtc
aagtatgaagctgctggaaccctggtcactctctccagtgcgcccactgccatcaaggca
gccgctcagtgctacatcgacctgatcatcaaggagagcgacaataacgtgaagctgatt
gtgttggaccgactggtggagctgaaggaccacccttcccatgagcgagtgctacaggat
ctggtgatggacatcctgcgggtactgagcacccccgacctggaagtgcgcaaaaagacc
ctccaactggcgctggaactggtgtcctcgcgcaacgtggaagagctggtcatcgtgctg
aagaaagaggtgatcaagaccaataacgtgacagagcacgaggacacggacaagtacagg
cagctgctggtgagaacgctccattcctgcagtgtgcgcttcccagacatggccgccaac
gtcatcccagtgctcatggagttcctcagcgacagcaacgaggcggcggcggctgatgtc
ctggagtttgtgcgggaagccgtgcagcgctttgataatctccgcccactcatagtggag
aagatgctggaagttttccatgcgatcaaatcagtcaaaatatacagggccgccctgtgg
attttgggtgaatattgcagcacaaaagaagatattaacagtgtgatgactgaagtgcgc
cggtccctgggagaggtgcctatagtagagacggaactgaagaaggaatcgggagagtta
aagccagaggaggacgtgacggtggggccgacgcaaaagctggtgacagagatgggcacc
tatcccacgcagagcgccctgagcagctcccggcccgcaaagaaagaagaggagagaccc
ccgctaagaggcttcttgctggacggggatttctatgtggctgcgtcccttgctaccacg
ctgaccaagattgcgttgcgctacgtggcgttagtccaggagaaaagaaaacagaattcg
ttcgtggcagaagccatgttgctgatggccaccatcctccacctgggcaagtcctccctc
cccaagaagccaatcacagacgacgacgtggatcgcatctccctttgcctgaaggttctg
tcggaatgttctcccctcatgaacgagattttcaacaaggaatgtcggcagtctctgtcc
cacatgctgtcggccaagttggaggaggagaagctctcgcagaagaaagagtccgagaag
aggaatgtgacggttcagccggacgaccccatttccttcatgcaactgacggccaagaac
gagacggcctccaaagaggatcagtttcagctcagccttctggccgccatggggacaacg
caaaggaaggaggccgccgaccccctggcctccaaactcaataaagtgacgcagctgacg
ggattctcagacccggtgtacgcagaagcctatgtgcacgtcaatcagtacgatattgtg
ttggacgtcctggtggtgaaccagaccggcgacacgttgcagagctgcaccctggagctg
gcaacactgggcgatctgaagctggtagagaagccctcccctctgaccctcgccccccac
gacttcgcaaacatcaaggctaacgtcaaagtcgcctccacagagaacgggattatattt
ggcaacatcgtgtacgatgtatccggtgcagccagcgacaggaactgcgttgtcctgagc
gacatccacatagatattatggactatatccaaccggcgtcctgcaccgacacagaattc
cgacaaatgtgggcggagtttgagtgggaaaacaaggtgacagttaacaccaacatcacg
gatctgaatgagtatctgcagcacatcctcaaatcgaccaacatgaaatgtctcaccccg
gagaaggcgctgtccggttactgcggcttcatggcagccaatctgtacgcccgctccata
tttggggaagacgccctggccaacgtcagcatcgagaagcccattcacctcggaccagaa
gcgcccgtaactgggcacataaggattcgcgctaagagccaggggatggcgctcagcctg
ggggacaagatcaatctctcacagaagaaatcctgtatataa
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