KEGG   Xenopus tropicalis (tropical clawed frog): 100216240
Entry
100216240         CDS       T01011                                 
Symbol
patl2
Name
(RefSeq) protein PAT1 homolog 2
  KO
K24823  protein PAT1 homolog 2
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    100216240 (patl2)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     100216240 (patl2)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 100216240
NCBI-ProteinID: NP_001135679
Xenbase: XB-GENE-5892251
UniProt: B5DEB9
LinkDB
Position
2:complement(14017671..14039434)
AA seq 735 aa
MDLGSDQLLPEDYFLAEEGALLEEMAEEDEEIDLYNEVTFGLDQESDEEPTKQEEDHKKP
VQIPEAPKIEEPEKPQPIKETKKPEKSPLREVKIVVESDEEHVDRSIDSGGHTMNSTMDD
SELGDPAVMRAFHGKPTLESLDSAVVDSGIGSTWSELDTDYDQSGMDSGLWEASPKVSMS
ATGQILEDKAILRVMERAPYLPPANLEFLGSPLQRGFMPSQRLQRPEMGVMSPKPYRPRF
MRQQSPLVPRSMRPPFPFTPPRRGPPIFTPNQSPGFVSQTPFRPMSPNVSTPTRPMTPKM
VRMHFGPMSPSPSFSPFFSPMGNALQRFKVPGHVTQLHPQHRRILSQRQRPQSSSRKQWE
SRPDPYASLMSQKEKEWVIKLQMIQLQSENPHLDDYYYQAYYEKLERKLAEEELLGERKK
REPTKLVTPYIQKAEMYESVVHIEGSLGQVAVSTCYSPRRAIDAVSYAMPDEAIKALGYQ
RLRVLKHTEKVFLLLLEVEELARKMSHIPEEEHAHFQHKQNYKVQRIYDILNMAPCHSED
ESENEFLQLLQVGKGKKLIARLLPFLTRVQAGKILLLVVQHLPFLIKNDSAEESLSVLYG
PLKNIINGLSFTELIGVIQELTRPLPESSDLPLTLAFQNQFGISLLYCLLSHGERLLSSD
MPMEPCIGDFEKWTDTVFLVAKELSHVSKSSMVEPLFLPSNLLSLFCRYLDKQTIHKLED
KMECPAIPPYTAVPS
NT seq 2208 nt   +upstreamnt  +downstreamnt
atggatcttggctccgaccaacttttgccagaggattatttcctggcagaagaaggagca
ttgctagaggaaatggctgaagaagatgaagagattgatctgtacaatgaggtgactttc
ggtttagaccaagagtctgatgaagaacccaccaaacaggaggaggatcataaaaaacct
gttcaaatacctgaagcaccaaagatagaagagcctgaaaaaccacaacctataaaggaa
acaaagaaacctgaaaagtccccactgcgtgaggttaagattgtggtggaatctgatgaa
gagcatgtggatcgttccattgactctgggggtcatacaatgaattcaaccatggatgat
tcagagcttggagaccctgctgtaatgagagcatttcacggaaaaccaacactggagagc
ttggacagtgcagttgtggacagtggaataggatctacatggagtgaactggacacagac
tatgatcagagtggaatggattcaggcctttgggaggcttctccaaaggtttccatgtcg
gcaactgggcaaatattggaggataaagcaattctgcgcgtgatggaaagggcaccttac
ctgccaccagcgaacttagagttcttggggtctcccctgcagagaggatttatgccttca
caaaggctccaaagaccagaaatgggtgttatgtctcccaagccttacagaccaagattc
atgaggcagcaatctcctcttgtacctcgctcaatgcgtccaccattccccttcacacca
ccaaggagaggtccaccaatctttaccccaaatcagtctccaggttttgtatctcagact
ccatttagaccaatgtcacccaacgtcagcaccccaacccgaccaatgactcctaaaatg
gtgaggatgcactttggcccgatgtctcccagcccgagcttctccccattcttcagtccc
atgggtaatgcactgcaaaggtttaaggttccaggccatgtcacacagttgcacccccag
catagaaggatactcagtcaacgtcagaggccgcaaagttcaagtcggaagcagtgggaa
agtagaccggacccttatgcgagcttaatgtctcaaaaggaaaaggagtgggtaataaaa
ctgcaaatgattcagttacaaagtgaaaatccccacttggatgactattattatcaggct
tactatgaaaagttagagcgtaaattggctgaggaagaacttttgggagaacgcaagaaa
cgagagcccacaaaactggttacaccatacattcaaaaggcagagatgtacgagtcagtg
gttcatattgagggttcccttggacaagtggctgtttctacctgctacagcccgaggaga
gcaatagatgccgtttcctacgccatgccagatgaggctattaaagcacttgggtaccaa
aggttaagagtccttaaacacactgagaaggtgttcctcttactcttagaagttgaagag
ctggcaaggaagatgtcccatatacccgaagaagagcatgcacactttcagcacaagcag
aactataaagtgcaaaggatatatgatattctcaatatggcaccctgccacagtgaagat
gaatctgagaatgagtttttgcagctcttgcaagtgggaaaaggcaagaagttgatagca
cggctccttccattccttacgagggtgcaggccgggaagattctcttgctcgtagttcag
cacttaccattcctcataaagaatgactcggcggaagagtccctttctgttctctacggc
cccctaaagaatataatcaacgggctttccttcactgaactcatcggagtcattcaagag
ctcacccgaccattgccagagtccagtgacctgcccctcacacttgcatttcagaatcag
tttgggatctcgctgctctattgtttgctgagccacggtgagaggctgctatcatctgac
atgcctatggagccttgcattggagactttgaaaaatggaccgatacagttttcctggtt
gctaaggagctgtctcatgtctcaaagtcctccatggtggagccactcttcttgcccagt
aacctgctctccttgttctgccgttacctggacaagcagactattcataaactcgaggac
aaaatggaatgtcctgctatccccccatacacagctgtaccttcatga

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