Xenopus tropicalis (tropical clawed frog): 100216247
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Entry
100216247 CDS
T01011
Symbol
u2surp
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein
KO
K12842
U2-associated protein SR140
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100216247 (u2surp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100216247 (u2surp)
Spliceosome [BR:
xtr03041
]
Complex A
U2 snRNP components
U2 related factors
100216247 (u2surp)
Complex B
100216247 (u2surp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Surp
RRM_1
cwf21
CID
CTK3
SET_assoc
RRM_7
Motif
Other DBs
NCBI-GeneID:
100216247
NCBI-ProteinID:
NP_001135684
Xenbase:
XB-GENE-494209
UniProt:
B5DEC9
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All DBs
Position
5:119889078..119928274
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AA seq
970 aa
AA seq
DB search
MAEKTSGGSQRAGQKQSFLESKLKSFSIGKMSAAAKRTLSKKEQDELKKKEDEKAAAEIY
EEFLAAFEGGDASKVKTFVRGGIVNATKEEHEADEKRGKLYKPSSRFSEPKSQQSSNERP
PPPIILGEPKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRTSRFEPPQTDT
DTQRRLMDTPSSRRSRSSALDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFG
PLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMVMNFEMKLGWGKAVPI
PPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMMPLPKNKEEFEKTLSQAIVK
VVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQAPAHVYYRWKLY
SILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMAEEQEAEPFVEEPIKKGSLKEEQ
RDKLEEILRGLTPRKNDIGEAMMFCLNHAEAAEEIVDCITESLSILKTPLPKKIARLYLV
SDVLYNSSAKVANASYYRKYFEAKLCQIFADLNAAYRAIQGHLQSENFKQRVMACFRAWE
DWAIYPEPYLIRLQNIFLGLVNIEDKEPEEVPDDLDGAPIEEELDVPLIEDVDGIPIDGA
PIDDLDGVPIKSLEDDLDGVPLDINDDAKKNEPIFKVAPSKWEAVDESELESQAVTTSKW
ELFDQHEESEEEENLNQDEESEDEEDTQSSKSEDQHYYSNPIRDEMSDSKSMKYSEMSEE
KRAKLREIELKVMKFQDEIESGKRPKKPGQSIQEQVEHYRDKLLQREREKELERERERDK
KDKDKAEYRTKEKKDKDESTPTRKERKRRHSGSVSPTRSSSSRRGKSPSPKSERSERSER
SHKDGSRSRSSHKDSPRDVTKKSKRSPSGSRTPKRSRRSRSRSPKKSVKKSRSQSRSPHR
SHKKSKKSKH
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaagacgtctggcggctcgcaacgagcggggcaaaagcaatcttttttagaa
agtaaacttaaatccttcagtattgggaaaatgagtgctgctgctaaaagaacattaagc
aagaaggagcaagatgagctgaagaaaaaggaagatgaaaaagctgccgcagagatttat
gaagaatttcttgctgcgtttgaaggaggtgatgccagcaaagtgaaaacatttgtaaga
ggagggattgttaatgccacaaaagaggaacatgaagcagatgaaaagcgaggaaaatta
tataagccttcttcacgattttcagaacccaaaagccagcagtctagcaacgagagaccc
ccacctccgattattcttggtgaaccaaaaaaacctcctctaaagaaaggggaaaaagaa
aagaaaaaaagtaatttggaacttttcaaagaagaactgaagcaaatccaggaggagagg
gatgaacgtcacaaaactaaaggtagaacaagcagatttgaaccccctcaaactgacaca
gatacacaacggagattaatggacacaccatcttcacgaagaagcagatcttctgccctt
gatgattatgcacctgggtcacatgatgttggagatccaagcaccactaatttatatctt
gggaatatcaatcctcagatgaatgaagaaatgctttgtcaggaatttgggcgttttggc
ccattggctagtgtcaaaattatgtggccgcgaacagatgaggagagggcaagagagaga
aattgtggctttgtagctttcatgaacagaagggatgctgaaagagctttaaaaaacttg
aatgggaaaatggttatgaattttgagatgaaactgggatggggaaaggctgtacctatc
cctccacatccaatatatattcctccatccatgatggaacacacccttccaccccctcct
tctggtcttccatttaatgcccaacctagagagagactgaagaaccccaatgctcctatg
atgccacttccaaaaaataaagaggaatttgagaagactctgtcgcaagccatagtcaaa
gtggttatcccaacagaaaggaatttactcgctttgatacatcggatgatcgagtttgtg
gtgcgtgaagggccaatgtttgaagctatgatcatgaacagagaaatcaacaatccaatg
tttaggtttctgtttgaaaatcaggctcctgctcatgtttattacaggtggaaactctat
tcaatattacagggggactccccaacaaaatggagaacagaagacttcagaatgttcaag
aatggctcattctggagacctccacccttgaatccatacctgcatggaatggctgaagag
caggaagctgagccttttgtagaagaaccaatcaaaaagggctcccttaaggaagaacaa
agggataaactggaagagatcttacgagggctaacaccaagaaaaaatgacatcggggag
gctatgatgttctgcctgaatcatgctgaggctgctgaagagattgtagactgtataacg
gagtctttgtctatcttaaaaaccccactccctaaaaagattgccagactatatctagtg
tctgatgtcttatataattcttcagctaaagttgccaatgcttcatactacagaaaatac
tttgaagcaaagttatgccaaatatttgctgatctcaatgctgcctacagagctatacaa
ggtcacttgcagtcagaaaattttaagcaacgtgtcatggcttgctttcgtgcatgggaa
gactgggcaatttatcctgagccttacttaattagattacaaaacattttcctgggactt
gtaaatattgaagataaagaaccagaggaagtaccagatgatttggatggtgctccgatt
gaggaagagttggatgtacctcttattgaggatgttgatggaatcccaattgatggtgct
cctattgatgacttagatggtgttcccataaaatctttagaagatgatttggatggagta
ccattggacattaatgatgatgctaagaagaatgaacccatttttaaagttgcaccttcg
aaatgggaagctgtggatgaatcagaacttgaatcacaagcagttacaacatcaaaatgg
gaattatttgaccagcatgaagagtctgaagaagaagaaaatctgaaccaagacgaagag
agcgaagacgaagaggatacgcagagctccaaatctgaggatcagcattattactcaaac
cccatcagagatgaaatgtcagattctaaatccatgaaatactctgaaatgagtgaagaa
aaacgtgccaaactcagggaaatagagcttaaagtaatgaaatttcaagatgaaattgag
tctggaaaaaggccaaagaaacctggacagagtattcaagaacaagttgaacactatcgg
gataaacttcttcagagggaaagagaaaaagagcttgaaagggaaagagagagggacaaa
aaagataaagacaaggctgagtatcggacgaaagaaaagaaagacaaagatgaatctact
cctaccagaaaagagaggaaaagacgccacagtgggtctgtaagtccgacgcgaagtagt
agcagcaggcgagggaagtccccttcaccaaaatcagagcgttcagagagatcggagaga
tcccataaagatggctctcgatccaggtcttctcataaagactcacccagggatgtcact
aaaaagtccaaaaggtcaccttctggctctaggacaccaaaaaggtctcgacggtcgcgg
tcacggtcacccaaaaagtctgtaaaaaaatccaggtctcaatctagatctcctcacaga
tctcataagaagtcaaagaaaagcaaacactga
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