Xenopus tropicalis (tropical clawed frog): 100216279
Help
Entry
100216279 CDS
T01011
Symbol
itgb5
Name
(RefSeq) integrin beta-5 precursor
KO
K06588
integrin beta 5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04145
Phagosome
xtr04148
Efferocytosis
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04810
Regulation of actin cytoskeleton
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100216279 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
100216279 (itgb5)
04148 Efferocytosis
100216279 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
100216279 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100216279 (itgb5)
04810 Regulation of actin cytoskeleton
100216279 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100216279 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100216279 (itgb5)
Membrane trafficking [BR:
xtr04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
100216279 (itgb5)
Cell adhesion molecules [BR:
xtr04515
]
Integrins
Integrin beta subunits
100216279 (itgb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
PSI_integrin
I-EGF_1
EGF_2
EGF_TEN
vWA_SIBA-E
DUF2975
Motif
Other DBs
NCBI-GeneID:
100216279
NCBI-ProteinID:
NP_001135704
Xenbase:
XB-GENE-6455199
UniProt:
B5DEV6
LinkDB
All DBs
Position
9:complement(89596348..89684328)
Genome browser
AA seq
807 aa
AA seq
DB search
MGRRGAPHTARSPLLLALSLLSCLVPSLGGPNVCTTRSATSASCQQCLVTHPQCAWCSQE
EFGGSSTVTSRCDFAHNLISRGCKKEFIEGPGSTVTVIKNLPLSTKESSSSQTNFIQVAP
QKISLSLRPGAAASFKVQVRQVEDYPVDLYYLMDLSLSMKDDLNTIRNLGTILAAEMKKL
TSNFRLGFGSFVDKNISPFSYTAPKYQNNPCTGYKYSPVCVPSFGFRHLLSLTDKTNSFN
AEVQKQRVSRNRDAPEGAFDAILQAAVCGDRIGWRKEASHLLVITTDGVPHIALDGKLAG
LVQPHDGRCHLNEDNEYSASDQLDYPSLALLGEKLSENNINLIFAVTNSHYVLYKNFTAL
IPGTTAEILDQDSQNIIQVIVSAYNNIRSKVELTVSESPEDLSLSFTATCQDGSSHPGVK
KCGDLKIGDTVSFEVSVEARSCPPPGTEQTFTIKPVGFRDSLEVTVTYNCSCSCAQQGEP
ASSKCSGNGTYTCGVCECEAGFLGGRCQCGEEELSSDVTQNTCREAEGKTVCNGRGRCLC
GLCVCYQSEFGLISGSFCQCDDFSCARYKGALCSGHGECDCGECKCHAGYIGDNCNCTIE
TATCLSDDGQMCSGKGNCVCGRCQCIEPGAFGETCEKCPTCPDACGTKRDCIECRLYQTG
QLADNQTCQKLCKDEIVTVEELDTDNPEAAVCIYKTESDCVMRFTYSEESGRSVLRVLKE
PECASAPDTLTVLLAVVGSILLIGLVLLAVWKLLVTIHDRREFSRFQSERTRARYEMASN
PLYRPAVSTHNVDEMYSMLSKSYNGTT
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggggcgccggggggccccgcatacagcccggagtccgcttctactggccctatcgctg
ctttcctgcctggtaccgagtctgggaggccccaatgtctgtacgacccggagtgcaacc
tcagcctcgtgccagcagtgcctcgttacccaccctcagtgcgcctggtgctcccaggag
gagtttggtggctcctcgactgtaacttcccgctgtgactttgcgcacaatctcatcagc
agaggctgcaagaaggaatttatcgagggtcccggcagtaccgtcactgtaattaagaat
ctccccctcagtacaaaggagtccagctcctcacaaacaaacttcatccaggttgcacct
cagaagatctccctgtctctgcgcccaggggccgcggcttcatttaaggtgcaggtgcgg
caggtagaggattacccggtggatctctattacctgatggatttatctctttccatgaaa
gacgacctgaatacgatccgcaatctgggaaccatactggccgccgagatgaagaaactg
accagtaactttcgcttgggctttggatcctttgtggataagaacatatcccccttctcc
tacactgcccccaaatatcagaacaacccctgcacgggatacaaatactctccggtttgc
gtcccgtcgttcgggttccggcacctcctctctctcaccgacaagaccaacagctttaac
gctgaggtgcagaagcagcgagtgtcgcggaaccgggacgccccagaaggggcttttgac
gccatcctgcaggcggcggtgtgtggggatcggattggctggaggaaagaggcgtcgcac
ctgcttgtaatcaccactgacggcgttccgcacattgcgctggatgggaaactcgcggga
ttggtgcagcctcacgatgggcggtgccaccttaatgaggataacgagtacagcgcctct
gatcaactggattacccgtcgctggcgctgctgggggagaaactgtctgagaacaacatt
aacctcatatttgctgtgaccaatagccactatgtgctgtataagaacttcacggcgctg
attcctggcaccacagccgagatcctggaccaggactcccagaacatcatccaggtgatc
gtcagtgcatataataacattcgctccaaggtggaactgacggtgtcggagagccccgag
gacctgagtctgagtttcaccgctacctgtcaggatggctcctcccacccgggggtcaag
aagtgcggagacctgaaaattggcgacacggtatcatttgaggtgtcggtagaggcccgg
agctgcccccccccgggcacggaacaaaccttcaccatcaaaccggttgggttccgcgac
tccctggaagtgaccgtcacctataactgcagttgcagctgcgcccagcagggggagcca
gcgagcagcaagtgcagcggcaatgggacctacacctgcggggtgtgcgagtgtgaggcg
ggcttcctggggggccgctgtcagtgcggggaggaggagcttagcagcgacgtcacccag
aacacctgccgggaggccgagggcaaaaccgtgtgtaacgggcgggggcggtgcctgtgc
ggcctgtgcgtctgttaccagagcgaattcggcctcattagcggctccttctgccaatgc
gacgatttctcctgcgccaggtacaagggcgccctgtgctcagggcacggcgagtgtgac
tgcggggagtgcaagtgccacgccgggtacatcggtgacaactgtaactgcaccatagag
accgccacttgcctctctgatgacgggcagatgtgcagcgggaagggcaactgcgtgtgc
gggagatgtcagtgcattgagccgggggctttcggagagacttgcgagaagtgccccacc
tgccccgacgcctgcggaaccaaaagggactgcattgaatgtcgcctgtaccaaactggg
caactcgctgacaatcaaacctgccagaagctctgcaaggacgagatcgtcacagtggaa
gagctggacactgacaatccggaggcggccgtgtgtatttacaagacagagagcgactgc
gtcatgagattcacttactcggaggagagcggcagatccgtcctgagggtcctgaaggaa
ccggaatgtgccagtgcccccgataccctgaccgtgctgctggccgtagtggggagcatc
ctgctgattggcctcgtcctattggccgtatggaagctgctcgttaccattcatgaccgg
cgggaattctccaggtttcagagcgagcgcacgagggccagatatgagatggcatcgaac
ccgctgtaccggccggcggtctctacgcacaacgtggatgagatgtacagcatgctgagc
aagtcctacaacggaaccacatag
DBGET
integrated database retrieval system
