Xenopus tropicalis (tropical clawed frog): 100327235
Help
Entry
100327235 CDS
T01011
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
100327235 (pdcd11)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
90S particles
Other 90S particles
100327235 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
Suf
Spt6_S1
TPR_14
TPR_19
OB_RRP5
TPR_12
ARM_TT21_5th
TPR_CcmH_CycH
TPR_15
TPR_6
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
100327235
NCBI-ProteinID:
XP_004915908
Xenbase:
XB-GENE-967218
UniProt:
A0A7D9NKE2
LinkDB
All DBs
Position
7:complement(28561137..28591083)
Genome browser
AA seq
1811 aa
AA seq
DB search
MEESFPRGGTQKKTDQKTVKKRPKENDGNLFSTYHEENEQEIKKKKKVFHEKPKAASQEK
SVTTAAKETVEIPQYKNLSVGMMFLGCVKQAKDFELAVSLPYCLTGYIQATNICEAYTKL
IGEQVKKDDPMEALTPLSELYSPGMLVRCAISSLETTTSGCNSVKLSINPKHVNKALTTG
SLKAGMLVSGCVSSVEDHGYLVDIGVTGSKAFLPRQKAQLFLNQAGKGPLLRIGQYLNCV
IQEVKNEGRIVRLSITQNDVTGALATMEQNWTLNNLLPGLVLKAQIEKVTQSSITLSFLS
SYTGFVDFLHFEPKKIGSYKEGQEVKACILWLDPSTKSIRLTLRQCFQQPGNPLPQLTSD
WVGSVLENCMVQTLVRNAGAIFELDGGNLGFAFKHNLSASKHPDNEIFKKGTAHKGRIKE
FSPMEEMHFLSLREKMITDLFLRHEDIQAGQVLEGTIQSLEAVGLVVKITDHLTGLVPKL
HFADVLLKHPEKKYIIGNKIKCKVLTVITSERKLILTRKKTLMKSKLPIIASFDDAQPGL
ITHGFIVAIKDYGCIVKFFNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVRVLDCNPQ
TQKLLLSFRITEEGETEQEQRYLKKTKAVKLDVGKVVDTRVVSKTDKGVNVLILPEESPA
FIPKMHLSDHISNCELLWHALEEGDNIPGVMCLSTFKGHHILTKKAVLISSFEKGSCVKV
ISEVQTGMHLTGFVKSIMPYGAFVEFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVLAK
VIKTDEEKQRFLLTLKMSECAPSDCSAEGLLLLSQCFSELQLLKGLLSRKGDPEDELSIY
TLTSGQKLTLVVENAEENGPVHFSTGSITGAQTVSATHNNIGDETPIAGQKVKAVVLNVD
LLKLHVYVSLNEALLKKKKNVPKMNSSHSADVLHVAEEFAVVSLTGPAHLAAVPMSSHLN
DTFHFESEKLKVGETITVILKATSVNEQGLLLAVQNKSALKTSKNQGQTKQSDVKTSGFM
AHGLKVGDLVSGTVKSIKPTQVIVSINDNVCGFIHVSQITEDTPLGSFPTSKLSPKQEVT
GRVIGGREVKSHRYLPITHPDFIHSLPELSILPGLINKDNKVPKPRPLKTFTPGEKVTCY
INKYNTEKKYLEVEITPQIRGRIELLLLSQTPKNLKRPEKLFKNGQSLSATVVGPDATHK
HLCLSLTGIYSLEEGSVTMASVTKVVKGSGLTLSLPFGKTGEASIFHLHDNYTEASLDKF
TPGKIVRCAILSVSKTIKVSLMQSKINQQASKSTDDKEITSFDSLEEGQLVTGFVSAVTQ
NKGVFFRLSSSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSL
LPSDTGKPDVIPESAGFSKRKNKEKKTTTKRKRENLEKGSQKKKSQESKEDEDSGVEVYC
REEDSEDKTKKTQTQQQSQEQTSSQPSVSRLQVSTGFSWDVSLNTLKPSLAGANDSSSDS
DEEEDEQPKKKKMKKELAREKKEAEKELSKKEAALQDSGRQPQSADDFDRLVISSPDSSI
LWLQYMAFHLHATEIEKARVVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLVKA
FERAVQYNEPLKVYQQLADIYVKSEKFKQAEDLYNTMLKRFRQEKSVWIKFATFLLKQGQ
GDGTHRLLQRALKSLPEKDHVDVISKFAQLEFQLGDSERAKALFESTLSSYPKRTDLWSV
YIDMMVKHGSQREVRDIFERVIHLSLAAKRIKFFFKRYLENEKKHGSAESVQAVKEKALQ
YVESQSSLAAT
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagtttcccacggggtggaacccagaaaaaaactgatcaaaaaactgttaaa
aaaaggcctaaggaaaatgacggcaaccttttctcgacttatcatgaggagaatgaacag
gagatcaagaagaaaaagaaagtatttcatgaaaagccaaaggctgctagtcaagaaaaa
agtgtaacaacagctgcaaaggaaaccgtggagattccacagtataaaaacctgagcgtc
gggatgatgttccttggctgtgtgaaacaggctaaagattttgagctggcagtgagtttg
ccatattgcttaacaggctatatccaagcaacaaatatttgtgaggcgtatactaaactc
attggtgagcaagtgaaaaaagatgaccccatggaggcattaacacccctctctgagctg
tacagtccaggaatgttggtacgatgtgcaataagcagtttagagacaacaaccagtggt
tgcaacagcgtcaaactgtccatcaacccaaaacatgtcaataaagctctgaccaccgga
tcgctgaaagcaggcatgcttgtatctgggtgtgtgtcaagcgtagaagaccatggatat
cttgttgacataggagtcactggaagtaaagcattcctgccacgtcaaaaagcacaatta
tttttaaatcaagcaggaaaaggacccttactcagaataggacagtacctaaactgcgtg
attcaagaagtgaagaatgaaggaaggatagtccgtctgtccatcacccaaaatgatgtg
actggggcccttgcaactatggaacaaaattggactctgaataatctattgccgggactt
gtacttaaagcacagatagagaaggtgacccagagcagcatcactttgtctttcctttca
tcctacacgggctttgtggatttcttgcactttgaaccaaagaaaatcggttcctacaag
gagggtcaggaagtcaaagcctgtatcttgtggcttgatccttccacaaagagcatcaga
cttacactccgccagtgttttcagcagccagggaaccccctgccccagctcaccagtgac
tgggttggctctgtacttgagaactgcatggttcaaacactggttaggaacgctggagcc
atttttgagctggatggaggaaacctgggctttgcgtttaaacataatctttctgcttcc
aaacaccctgataacgaaatcttcaaaaaaggcactgctcataaaggaagaatcaaagaa
tttagtcccatggaggagatgcactttctgtctctaagagagaaaatgattacagatctg
ttcttgcgccatgaagatatacaggctggacaggtgctggagggcacaatacagagcttg
gaagcagtaggattggtggtgaagatcaccgatcacctcactggtcttgtgcctaaactc
cattttgctgatgttcttctcaaacatcccgagaagaaatacattattgggaacaagatc
aaatgcaaggtcttgactgtaattacttctgaacgaaagttgatcctgacacggaagaaa
actctgatgaagtcaaagttgcccataattgccagctttgacgatgcccaaccaggccta
attacccatggcttcattgtggccatcaaagactatggatgcattgttaaattctttaat
gaggtacaaggcctagctccacgccgtgaactgggctctctgcaagagatttcctcgctg
gaagatgccttttacagagggcaggtaattaaggttcgagttctggattgtaacccccaa
acacaaaaattgctgttgtccttcagaataactgaagagggggagactgaacaagaacaa
cgctacctcaagaagacaaaggcggtgaagctagatgttggcaaggtggttgacacaaga
gtcgtatcgaaaaccgacaaaggtgttaatgttctaatcctgcctgaggaaagccccgcc
ttcattcccaaaatgcatctctcagatcacatatcaaattgcgagctactctggcatgcg
ctggaagaaggggacaacattcctggagttatgtgtcttagcaccttcaagggccaccat
atattaacaaagaaagcagttctgatttcctcctttgagaaaggatcgtgcgtaaaagtc
atctctgaagtgcagacagggatgcacctgactggctttgtgaaaagtatcatgccatat
ggtgcctttgttgaattcccatacggcctgtttggattggtgcccaaatcagaaatatca
gacaagtttgtgaccaacatcagtgaccacttattcgagggccagactgtgttggccaag
gtgatcaagacagatgaagagaaacagcggttcctgctgaccctgaagatgtcggagtgc
gctcccagtgattgttctgctgaaggccttctccttctgagccagtgtttcagtgaactg
cagcttctgaagggtctgctttctaggaaaggagatccagaggatgagctaagtatctac
acactgacctcaggacaaaagctcactttggttgttgagaatgcagaggagaatggtccg
gtccacttcagtactggcagcattactggcgcgcaaactgtatcagccacccataataac
attggagatgaaacgccaattgctggacagaaagtcaaagctgtggttttaaatgttgat
ttgcttaagctgcatgtttatgtatctctaaatgaggcactgttgaaaaagaaaaagaat
gtgccaaagatgaattcgtcccactcagcagatgtgctgcacgtggcagaagaatttgca
gttgtgtccttgacaggccctgctcacctagctgctgttcctatgtcatctcaccttaac
gacaccttccattttgagtctgaaaagctgaaggtgggagagaccatcaccgtaattcta
aaagcaacgtctgtgaatgaacagggcctcttgctggctgtgcaaaataaatcggccttg
aagacaagcaagaaccaggggcaaacaaagcagtcagatgtgaaaacctctggtttcatg
gcacatggtttgaaagtgggagatctggtatctggaacagtgaaaagtataaagcccaca
caagtgattgtctccattaatgataatgtatgtggctttatccatgtttctcaaataaca
gaggataccccactgggttctttccccacctccaaactgagcccaaagcaggaggtgaca
ggtcgagttattggaggaagagaagtgaagtcgcacagataccttccaatcacacatcct
gacttcatacattctcttccggagctgagcattctcccaggtttaattaacaaagacaat
aaagttccaaagccaagaccactgaaaacgttcacccctggtgaaaaggttacatgttat
ataaataagtataacacagagaagaaatatctagaggtggagattacaccacaaatccgg
gggagaattgagctgctacttctttcccagacccccaagaacttaaagcgtccggaaaaa
ctgttcaagaacggccaatccttgtctgcaacggtggttgggccagacgccactcacaag
cacctctgtctttcattaacaggtatctattcattggaggaaggatctgtgacgatggcc
tctgtgaccaaggtagtaaagggctctgggctgacactttccctgccatttgggaagact
ggagaagccagtatttttcacctacatgacaactacacggaagcttcattggataaattc
acccctgggaagattgtcaggtgtgccatactttctgtttccaagacaattaaggtttct
ttgatgcagtccaagataaatcaacaagcttccaagagtacggatgataaggaaattact
tcctttgatagtctggaagaagggcaattagtcactggctttgtgagtgcagttacacaa
aacaaaggagtgtttttcaggttatccagctctattgtgggacatatccagttccggaat
atcactagttattttgtttatgatacctcggcatacagtaaatatatcccagaaggcacc
ttgcttacagccaaagttctgtctgtagatccggagcagaaacacgtggagctttcacta
cttcccagtgacaccggaaagcctgatgtgatacctgaatctgctggattcagcaaaagg
aaaaataaggagaaaaagaccacaacaaaaaggaaaagggagaatttggaaaagggttca
cagaagaagaaatcccaggaatctaaggaggatgaggacagtggagttgaggtttactgc
agagaggaagattcagaggataaaacaaagaaaacacaaacacagcagcagtcccaggag
caaactagcagtcaaccatctgtctccaggctgcaagtttccactgggttctcgtgggat
gtcagcctaaacactctcaaaccatctctagctggggctaatgacagtagctcagacagt
gatgaagaggaggatgaacagcccaagaaaaagaagatgaaaaaagagctggcgagagaa
aaaaaggaagcagagaaagaactttctaagaaagaagctgctttacaggattccggtcgg
caacctcagtcagcggatgactttgaccggcttgtcattagctccccagacagctccatc
ctttggctacagtacatggcattccaccttcatgccaccgaaatagagaaggcacgagtt
gtagcagagagagctctcaaaaccatttctttcagagaagaacaggagaagctcaatgtg
tgggttgcactgctaaacttggagaacatgtacggcactgaggaaagccttgtgaaggct
tttgaacgagcagttcagtataacgagcctttgaaagtctaccagcagctggccgacatc
tacgtcaagtctgagaagtttaagcaagcagaggatttgtacaacaccatgttgaagcgc
ttccgccaggagaagtctgtatggattaaatttgctactttccttctaaagcaaggccaa
ggagatgggactcacagactgttgcagcgtgcgcttaagagccttccggagaaagaccat
gttgatgtaatttcaaagtttgcccagttagagttccagctgggtgacagtgagcgggcc
aaagccctgtttgagagtacgctgagcagctatccgaaacgcacggacctctggtcagtt
tatattgacatgatggtgaaacatggcagccaacgggaagtgagggacatttttgagcga
gtgattcatctgagtttggcagctaaaaggatcaagttctttttcaaacgctatttggag
aatgaaaagaaacacggaagtgctgagagtgtccaggccgtgaaagagaaagcgctgcag
tacgtggaatcccagagttctctggcggccacatag
DBGET
integrated database retrieval system
