Xenopus tropicalis (tropical clawed frog): 100379741
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Entry
100379741 CDS
T01011
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
100379741 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100379741 (slx4)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100379741 (slx4)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
100379741 (slx4)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
100379741 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
Rad50_zn_hook
zf-C2H2_4
Neisseria_TspB
Motif
Other DBs
NCBI-GeneID:
100379741
NCBI-ProteinID:
XP_002932505
Xenbase:
XB-GENE-981723
UniProt:
F6UDN2
LinkDB
All DBs
Position
9:20677380..20691694
Genome browser
AA seq
1695 aa
AA seq
DB search
MVESDDEFTELCSKLLKRVKKNKPTEQGVPKTSTTAKSRLKRSKPSSKKQVDNEGAKVAE
ESIAAKGDLEKAVAQADQCDSSDTERKRKPKTHLSNVSIGPSQTGENEPPAHAEPVRPQA
QPRTKDLVLERMQQFKRACPNRMKINSAEPCDLNVNDQLQSDSALAAALQMDIREQQKSL
EDVGLFFCQLCQKDLTAMNSVIREQHVNRCLDQSESLGEASGPTIPSCPLCGKPFNSEKS
RASHLKRCAAQLEVPAHTLLQAVQRQTTESVTEAATCVVSAKAKRKAGPKKKEPPKKKKM
VQPNSEVEDLLVAMALSRSLQEDPTTPMCEIAQKAVPATKSSVPEKKSRKKQKNAPPPLL
LVQAPEAAFQRLQQRVAILLSEELELISNTALPQSWLSSIAEKEKHAWWRPLQDKQICTL
WEGSNMMDNRDLLGYYIQELNPPITPWKPPAQHKLYNSQPRTVTPVHLAATPPCSVSSAK
QQSTETCSQDGHLLSHSQKDRQALLDLAELAGEGMTLTQWKLGTSHEVDNRGRESVSSVT
ASGFVPSLQEETCKQSDHPQLSAPLVSLAADFMEMVNNPHLSDAQLQTDCGEVLSVHMFV
LYARCPLLVEAVHSEGFWVDEAGTGRVRRLLLNDVSAEAALCFLRFLYSASSTIPIHCLT
HVCELARRFGVSSLIEVCEHLVSEPENSETLDAAAEEEDDDGGMRAETFQELLKSMWVDE
DEGVAELETEGQGEDKLEAEAVGECDLEEIYEFAATQRRVTGKQDTQDGSSSELDMQNQE
SEDSALGERNEPERLVPSGPSTEYNKQTHTRASVPNVTIPATQQPCLAKVSPVSSPTGTP
KSHPSFSPSVSHSSLKPSCSQRLLSTSGCHASPAGNLFANSVLSEHLSPTSAESAGPTAG
VVASISPSRVNEAEQDLFIQRNPLPLDDSYDRMFSETCGEYVELSDTVIPVQNQEHTLTS
PPTTTVLPVLPELGSSPNLQHSPLNSDNSPCKIKGVTAAEPRSFPLCSLNSSRNSHDSDS
FHNPTNHTTSSSFAKSQEPDVILILSSDEETEPNMEGLLSPGSVHEGKDCILNGIKESPV
SFSIKRRSEGSSNLEMSSSMETSWLVPATPLPQTVLSVVSRLQTSCLPEVPQISTIQSAF
HYNSLSPPLLSPAKSPAKPLSPPVSPDLQLTQGSAQLPEVCRSSGSKASFAPSSLPASPT
SSSVVEVGDSEDECPIPKGQLGSPAASASHQSPFHFKTLSNNLSESSNEPMIPQLSPTTR
PTQDPVPLLEPCDNVDTKTSPAHSLLASPASSSVIEIENIQDGSPQTEVRLGTSGYSFYI
DYEPPIPVEDDLWFHGEETPKRPDPSPKTCTPPSIESTPKKEAVVQNSSTPHRGSPAPLR
EDGSVPHSSRLSFLNTQTWEEWEEEEEDLPAVLPLSERLSKAPESQKQLKTPVSIVRKRE
LAPKVPITPLPAYSDMDTPILKKELNRFGVRALPKKQMVLKLKEIFSYTHQVMSSDSDEE
VPSQLNRGGNGNKAPIHKPPVANKPKQSASAQGPVSSQAHKPRKAASVCNAKASTQEHNM
GSEQRLNASQESTTSSGGSDTSSLSQGSAANEFETAFADEEEDEPVPASQEVGREAATAE
AVKRFIESHPDLYKRILLYQPLELAALHAELKQAGIKVASGKLLDFLDTHCITFTTAAAR
KEKTSKRRRKAGKRF
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggttgagtctgatgatgaattcactgaactctgctccaaactccttaaaagagtgaaa
aagaacaagccaacagagcagggtgtcccaaagaccagcaccacagccaaaagcaggtta
aaaagaagcaaaccatccagcaagaagcaggttgacaatgagggtgctaaggtggcagaa
gagagcattgcagcaaaaggggaccttgagaaggccgtggcacaggcagaccaatgtgac
agcagtgatacagagagaaaaagaaaacccaagacccatctatctaatgtttcaattgga
ccatcacagacaggtgaaaatgaacccccagcccacgcagagccagttagaccccaggca
cagccccgtacaaaggatctggtcttggaacggatgcagcagtttaagagggcctgtcct
aaccgtatgaaaataaatagtgcagaaccatgtgaccttaatgtgaatgaccagctgcaa
agtgacagcgctttagctgcagctctgcaaatggacatcagggagcaacagaaaagcctg
gaagatgtaggactcttcttctgccaactctgccaaaaagacctgaccgctatgaattct
gtaataagagagcagcacgtcaacaggtgcttggatcagagtgagagtttaggggaagca
tccgggcccaccattccaagctgtcctttgtgcggaaagccgttcaattcagaaaagagc
cgagcctctcacctgaagcgttgtgctgcccagttggaagtacctgcacataccttactg
caggcagtccagaggcaaacaaccgagtcagtcacagaggcagcaacctgtgttgtttcg
gccaaggccaagcggaaagcaggacccaagaaaaaggagccccccaaaaagaagaaaatg
gtacaaccaaactcagaagtagaagacctactagttgccatggcattgtcacgctccctg
caggaggatccaacaactccaatgtgtgaaatagctcagaaggcagtgcctgctactaag
agctctgttccagaaaagaaaagtcgcaaaaaacaaaagaacgctcctcctcctctgtta
ttggttcaagcccctgaggctgccttccagagactgcagcaaagagtggcgattctcctg
agtgaagagcttgagcttattagtaacacagctttgccccaaagctggttatccagtata
gcggagaaagaaaagcatgcttggtggaggccattgcaggacaagcagatatgtactctg
tgggaaggcagcaacatgatggacaatagagatcttctgggctattacatccaggagctg
aacccccctataactccatggaagcctccagcacagcacaagctttacaattcacagcca
cgtacagtgacacctgtgcatctggcagcaacccctccatgctcagtctcaagtgccaag
caacaatctactgaaacctgcagccaagatgggcatcttctgtcccacagtcagaaggat
aggcaggcattactggatcttgcagagctagcaggagagggcatgacactgacccagtgg
aagctcggtaccagccatgaagtggacaacagaggaagagaatctgtgagcagtgtcaca
gccagtggatttgtcccctcacttcaggaagagacctgtaagcagagtgaccacccacag
ctctccgctcctcttgtttcacttgctgcagattttatggagatggtgaataatccacat
ttgagtgatgctcagttgcagacagactgtggcgaagttctgagtgtgcatatgtttgtg
ttgtatgcacgctgcccccttctggtggaggctgtgcactctgaagggttttgggtagat
gaggccggcacagggcgtgtgcgacgacttctcttaaatgatgtatctgccgaagctgcc
ctttgcttcctgcgcttcctctactctgcgtcctctactattcccattcactgcctcact
catgtttgtgagctggcacgcaggtttggggtcagcagtttaatagaagtctgcgagcat
cttgtttctgagcctgaaaactctgaaaccctagatgctgctgcggaagaagaggatgat
gatggtggcatgcgtgcagaaacattccaggagctgttaaagtccatgtgggtggatgaa
gatgagggtgttgcagagctggagacagaagggcaaggggaagataaattggaggctgaa
gctgtgggtgaatgtgatctggaagagatctatgagtttgcggccacacagcgcagggtt
acaggaaagcaggacacacaggatggaagcagcagtgaacttgatatgcagaaccaagag
tcagaagacagtgcacttggagaaagaaatgagcctgaaagattggtgccaagtggccca
agcacagagtataacaaacaaacacacacccgtgcttctgtaccgaatgttaccatacct
gcaacacagcagccttgtcttgctaaggtttcacctgtcagtagccccactggcacccct
aaatctcatccttctttttccccttcagtttctcattcctccttaaagccgtcttgtagc
cagcgtttactttcaacatctggctgccatgcatctcctgctgggaatctgtttgcaaat
tctgtcctttcagagcatctttccccaacttctgcagaatctgctggcccaactgccggg
gttgttgcttccatttctccaagcagagtgaatgaagccgagcaggatttgtttatccag
cgcaacccccttcccttggatgacagttatgaccgcatgttttctgagacttgtggagaa
tatgtagagctatctgacacagtgatacctgtacagaatcaagaacacacgcttactagc
cctcctaccactactgtgctgcctgttctccctgaacttggatcctcccctaacctccag
cactcacctttaaactctgacaattctccttgcaagataaaaggtgtgactgctgcagag
ccaagatctttcccactttgtagtctaaacagttccaggaattctcatgattcagactca
tttcacaatcccaccaaccatacaacttcatcttcctttgctaaatctcaggaaccagat
gtcatcctgattctctcttcagatgaagaaactgagcccaacatggaaggcttattatca
cccggtagtgtacatgagggcaaggattgcatcttaaatggcatcaaagagtctcctgtc
agcttcagtataaagagaagaagcgagggttcttctaatcttgaaatgagcagcagcatg
gagacctcatggttagtacctgctacacctttaccacaaacagtattgtcagttgtatcc
cgccttcagacttcctgcctacctgaggtgcctcaaatctccactatccagtccgctttc
cattacaactctttgtcacctcctctcttgtctccagccaagtccccagccaaacctcta
agccctcctgtgtctccagacttgcagctcactcaaggatctgcacaacttccagaggtt
tgcagaagttcaggtagcaaggcatcctttgccccttcttcactgcccgcttcccctacc
agcagcagtgttgttgaggttggagacagtgaggatgaatgtccaataccgaagggtcag
cttggaagtccggccgctagtgcctcccatcaatcacctttccatttcaagactttgtct
aataatctttcagagtccagtaatgaacctatgatcccccagctctccccaaccacaagg
cccactcaggatcctgtaccactcctagaaccttgtgacaatgtagatactaagacctct
cctgcccactcactcctagcatcccctgctagtagcagtgtgattgagattgaaaatatt
caggatggtagcccacaaacagaggttcgcctgggcaccagtggctacagcttttatatt
gactatgagccccctattcctgtggaagatgacctgtggtttcatggagaggagacacca
aaaagacctgatccctctcccaagacttgtacccctcctagcatagagagtacccctaaa
aaggaggcagtcgtccagaacagcagtaccccacatcgagggagcccagcaccgctgaga
gaagacggctctgttccacacagcagccgcttgagtttccttaatactcagacgtgggaa
gaatgggaggaagaggaggaagatcttcctgctgtactgcccttatcagaacgactgagc
aaagccccagagagtcagaagcagttaaaaacaccagtttctattgtgcgcaaaagggaa
ttggccccaaaggtccctatcacaccgttacctgcttattctgacatggacactccaatt
ctaaagaaagagttaaacagattcggagttcgggcgcttcccaagaaacagatggtgctg
aagctgaaagaaatcttcagttacacacaccaagtaatgagctcagattctgatgaggaa
gtgccttcccaattgaacagaggaggcaatggtaataaagcgcccatccacaagcctcct
gtggccaataaacccaaacagtcggctagtgcacagggtcctgtcagctcccaggctcac
aaacctaggaaggcagcatctgtctgtaatgcaaaggcatctacacaggagcataacatg
ggatcggaacagcgactgaacgcgtcccaagaatcaacaacgtcctctggtggcagtgac
acctcttccttatctcaaggctctgctgccaatgagtttgagacggcatttgcagatgaa
gaggaggatgagccagtgccggcttcacaggaggttggacgagaagcagccacagctgaa
gcagtgaagaggttcatcgagagtcaccctgatctgtataagcgcatcttgttgtaccag
ccattagagttggcggcactgcacgcagagctcaagcaggctggcatcaaggtggcatca
gggaaactgctggacttcctggatacgcactgcatcaccttcaccactgctgcagcacgc
aaggagaaaaccagcaaaaggaggcggaaagcagggaagcgcttttaa
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integrated database retrieval system
