Xenopus tropicalis (tropical clawed frog): 100379760
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Entry
100379760 CDS
T01011
Symbol
myo5b
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
100379760 (myo5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100379760 (myo5b)
04131 Membrane trafficking [BR:
xtr04131
]
100379760 (myo5b)
03029 Mitochondrial biogenesis [BR:
xtr03029
]
100379760 (myo5b)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xtr04812
]
100379760 (myo5b)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
100379760 (myo5b)
mRNA cycle factors
P-body specific factors
100379760 (myo5b)
Membrane trafficking [BR:
xtr04131
]
Others
Actin-binding proteins
Myosins
100379760 (myo5b)
Mitochondrial biogenesis [BR:
xtr03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
100379760 (myo5b)
Cytoskeleton proteins [BR:
xtr04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
100379760 (myo5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
Ac76
AAA_16
AAA_22
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
100379760
NCBI-ProteinID:
XP_031750784
Xenbase:
XB-GENE-988439
UniProt:
A0A6I8SJ57
LinkDB
All DBs
Position
1:complement(205239817..205366850)
Genome browser
AA seq
1809 aa
AA seq
DB search
MSVYELYSQYTRVWIPDPEDVWRSAEIIKDYKEGDKSLQLKLEDESVIQHRVDPNNLPHL
RNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYQQLPVYGED
VIYAYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYFAT
VGGSASEANVEEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMRTY
LLEKSRVVFQADMERNYHIFYQLCASASLPEFSELSLAEAEEFFYTNQGGDPVIDGVDDA
EDFEKTRQAFTLLGVKETHQMGIFKIVASILHLGNVAIQTEREGESCNLSKGDKHLTHFC
SLLGLEQDQMQHWLCHRKLVTTSETYVKTMSAEQAVNARNALAKHIYAQLFNWIVQHVNK
ALHTTIKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNSHVFKLEQEEYMKEQ
IPWTLIDFYDNQPCIDLIEAKLGILDLLDEECKVPKGTDQNWAQKLYDRHGSSQHFKKPR
MSNVAFIVVHFADQVEYQCDGFLEKNRDTVYEEQINILKASKYPLVADLFQNEKDTVPPT
PTGKSKISVRPAKPALKSANKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDYKE
SFSFDPKRAVQQLRACGVLETIRISAAGYPSRWTYHDFFNRYRVLMKKKDISLGDKKVIC
KNVLENLIKDPDKFQFGRTKIFFRAGQVAYLEKLRADKFRAATIMIQKTVRGWLQRVKYR
RMKKAAVTIQRYTRGHLARRLALHLRMTKAAITFQKQFRMIRVYRGFQKTRKAAVTIQSY
TRGMFVRRAYRQLLEQHKAAIIQKHWRGWRARKLFSKFRSAAVVIQCYFRRMKARRELKQ
LKIEARTAEHFKKLSVGMENKVVQLQRKLDEQNKEQKDLKEQLVSATSTHAVEVEKLQKE
LEKQRQAQQDENQLTSLQQELEALREELAKAYSEKKVVEDTLMNEKEQLLQRVSELEEEN
TNLKEEKEELSNKIILRSEDEFTQSTIKENLEIKKDLEEERSRHQNLVKEYTRLEQRYDN
LKEEVNIIKQQMPGHRRNPSNQSSLESDSNYPSISTSEIGDTEDTIKEVEEAGLEKAAMD
MSLFLKLQKRVRELELERKKLQSQLDKKEQQENKKSQVIDTTNEVIADRDTDIAYNNLKR
QELESENKKLKNDLNEMRKTIADGAVDGSSEEARIAMLLNQLKSAHEELDVRKEEVLMLR
TQIVKAAQQKESERIMSSEASWPNSNKEMDEDDAIEAYHGVCETNRLLEAQLQAQSRQHD
EEVEILTSHIDSLKEELEKQQQVLLQALQLSPEAQVEFGLQHEITRLTNENLDLKELLEK
SEKNEKKLKKQLKTYMKKGQDSEDVVQTERKPELTRQVTVQRIEKDFQGMLEYYKEEEPL
LVRNLIIDVKPEQMSSMVPCLPAYILFMCIRHADYINDDQKVHSLLTSTINGIKKVLKKH
HSEFQITSFWLSNSSRLLHCLKQYSGDEGFMTSNSPKQNEHCLRNFDLTEYRQVLSDLSI
QIYQQMIKIAETHMQPMIVSAMLETESIQGLSGVKQTGYRKRTSSMADGDNSYSLEAVIR
QLNTFNSIMCDHGLDPEIIQQVFKQLFYMINAVTLNNLLLRKDVCSWSTGMQLRYNISQL
EEWLRGKNLHPSGAAQTMEPLIQAAQLLQLKKKTEEDAEAICSLCTALTTQQIVKILNLY
TPVNEFEERVTVSFIRIIQAQLQERNDPPQLLMDSKYMFPVLFPFSPSAITLDTIQIPPS
LKLDFLMKV
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgtatgagctttactcccagtacacccgggtgtggatacccgatccggaggat
gtctggagatcagcagaaattatcaaggactataaagaaggggataaaagtctgcagtta
aaactagaagatgagtctgtcatacagcaccgtgtggatccaaacaacttaccgcacctc
cgcaacccagatatcctagtaggagagaatgacctgacggctttgagctatctccatgaa
ccagctgtgctccataacctaaaagtccgcttcctggaatcaaatcacatttatacttat
tgcggaattgtacttgttgccataaacccataccagcagttaccagtctatggagaagat
gtcatttacgcatacagcggccaaaatatgggagacatggacccccacatatttgcagtg
gctgaagaggcctataagcaaatggccagggatgaaaagaaccagtctatcatcgtaagt
ggagagtccggagcagggaaaactgtctctgccaaatatgccatgcgctactttgccaca
gtgggcggctcagcaagtgaagctaatgtggaagagaaagtattggcttctagtcccatc
atggaggctattgggaatgccaaaacaacccggaatgacaacagcagccgatttggaaag
tacattcagattgggtttgacaaacgatatcatattatcggtgccaacatgaggacttac
cttcttgagaaatcacgtgttgttttccaggctgatatggaaaggaactaccatattttc
taccagctctgtgcctctgccagcctgccggagttctccgagctgtcattagctgaagct
gaggagttcttttacaccaaccagggaggcgaccccgttattgatggagtggatgatgct
gaagactttgagaagacgagacaggctttcacacttttgggagtgaaggagactcatcaa
atgggcatctttaagattgtggcttccattctgcaccttggaaatgtagccatccagacg
gagcgggaaggggaatcgtgtaacctgtcgaaaggggataaacacctgactcatttctgc
agtttgcttgggctggagcaggaccagatgcaacactggctgtgccaccggaaacttgtc
accacctccgaaacgtacgtcaagaccatgtctgcggagcaggctgtaaatgccaggaac
gccttggccaagcacatctacgcccagctcttcaactggatagtgcagcacgtgaacaag
gccctgcacaccaccatcaaacagcactcctttattggggtcctcgacatatacgggttt
gaaacctttgaaattaacagctttgagcaattttgcatcaattacgccaatgagaagctg
caacagcaatttaattcgcacgtctttaaactggaacaagaagaatacatgaaagagcag
attccatggaccctgatagacttctacgacaaccaaccttgtattgacctgattgaggca
aaattaggcattttggaccttctagatgaagagtgcaaggtccccaaaggaactgatcag
aactgggcacagaagttatatgaccggcatggaagctcccaacacttcaagaaaccacga
atgtctaatgtggcatttattgtggtgcattttgctgatcaggtggagtatcaatgtgac
ggattcctggagaagaacagggacactgtgtatgaggaacagattaacatactaaaggcc
tcaaagtatccgctggttgctgacctgtttcaaaatgaaaaagacactgttccacctact
cctaccgggaagagtaaaatcagcgttcgccctgcaaaacctgctctgaaaagtgctaat
aaagaacataagaaaacagtgggacatcagttccggaactctctgcatctgctgatggaa
accttgaatgccacaactcctcactatgtgcgctgcattaagcccaatgactataaggag
tctttcagcttcgatccaaagagagctgtgcagcagctgagggcatgtggcgtgctggag
accatccggattagtgctgccggctatccatccaggtggacctaccatgacttcttcaac
aggtaccgagtcctaatgaaaaagaaagatatttctctgggagacaagaaggtgatctgt
aagaatgtcttagagaaccttatcaaggaccctgacaagttccagtttggacgaacaaag
atctttttccgtgctggccaagtggcctacttagaaaaactgcgtgcagacaagttccgt
gccgctaccattatgattcagaagactgtgcggggctggcttcagagggtgaaatacaga
aggatgaagaaggccgcggttaccatccagagatatacacgtgggcaccttgcccgaagg
ttggctctgcacctccgaatgacgaaggctgccatcaccttccagaagcaattccgaatg
attcgagtgtatcgcggcttccagaagactcgcaaggcagccgtcactatccagtcctac
actcggggaatgtttgtcaggagagcttatcggcagcttctggagcagcataaagccgcc
atcatccagaaacactggcgcggatggagggcacgcaaactgtttagcaaattccgcagt
gccgctgtcgttattcagtgttacttccgccgcatgaaagcccgacgggagctcaaacag
ttgaagatcgaagcccgaacagcagagcattttaagaagctcagtgtgggcatggagaac
aaggtggttcagctgcagagaaagcttgatgagcagaacaaagagcagaaagacctgaag
gagcaactggtatctgctacttcaactcatgctgtcgaggttgagaaacttcagaaggaa
ctcgagaagcagagacaggctcagcaggatgagaaccaactcaccagcttgcagcaggaa
ctggaggctctgagagaggaactggccaaagcgtatagtgagaagaaggttgtagaagac
actcttatgaatgagaaagagcaactgctgcagcgcgtctcagagctggaagaggagaat
actaacttgaaagaagaaaaagaagaactcagtaataaaatcattctacgatctgaagat
gaatttacccagagtacaattaaggagaacctggagatcaagaaagatcttgaggaggaa
aggtcccggcaccagaatttggtaaaggaatatacaaggttggagcagagatatgacaat
ctgaaggaggaggtgaacattattaagcaacaaatgccggggcacaggaggaatccgtcc
aaccagagcagcttggaatctgactctaattacccttccatatctacctctgagattggg
gacacagaggataccattaaggaggtggaggaggccgggctggaaaaggctgccatggac
atgtctctgttcctgaagctgcagaagagagtgagggagcttgagctggagaggaagaag
ctgcagagccaactggacaaaaaagagcagcaagaaaataaaaaatcccaggttatagac
acgaccaatgaggtgattgctgaccgcgacactgatatcgcctacaacaatctgaagcgg
caagaacttgagtctgaaaacaagaagctgaaaaatgacttgaatgagatgaggaagacg
atagcagatggagcagtagatggttcgagtgaagaggccagaattgctatgttactcaac
caactgaagtcggcccacgaggagctggatgtgcggaaggaagaagttcttatgctcaga
acccagattgtaaaggcagctcagcaaaaagaatcagagaggattatgagttcagaagcc
agttggccaaacagcaacaaggaaatggatgaagacgatgccattgaagcctatcatgga
gtctgtgagacaaacaggcttctggaggctcagcttcaggcacaaagcaggcagcacgat
gaggaggtggagatactgacctctcacattgactccctaaaggaagagttggagaagcag
cagcaggttctactccaagctcttcagctctccccagaggctcaggtggagtttgggctt
cagcatgaaattacccgcctcactaatgagaacctggaccttaaagaattattggagaaa
tcagaaaagaatgagaaaaaattgaagaaacagctaaaaacgtacatgaagaaaggacag
gattctgaagatgtagtgcagacggagaggaaacctgagctcacccgtcaagtgacagtg
cagcgaattgagaaggatttccaaggaatgctggagtattacaaggaggaagaaccgctg
ctcgtgagaaatctcattatagacgtgaagcctgagcagatgtcttccatggttccttgt
ctgcctgcgtatatcctcttcatgtgcatcaggcacgccgactacatcaacgatgatcag
aaggtccactccctgctcacctccaccatcaacgggataaagaaagttctaaagaagcat
cacagtgaattccagattacatctttctggctgtccaactccagccggctgctccattgc
ctgaaacagtatagtggggacgagggcttcatgaccagcaatagccccaagcagaacgag
cattgcctgaggaactttgatctgacagaataccgccaggtcctcagcgacttgtctatc
cagatctaccagcagatgataaagattgcggaaacgcatatgcagccaatgatagtgtct
gccatgttggaaacagaaagcatccaaggcctctcaggagtgaagcaaactgggtacagg
aagaggacctccagcatggcagatggggataattcctacagcctagaagctgtcattcgc
cagctgaacacgtttaacagcatcatgtgtgaccatggactggatcccgaaatcattcag
caagtctttaagcagctcttctacatgataaatgctgtaacgctgaataatctgctgctg
aggaaggacgtttgctcatggagcaccggcatgcagctaaggtataatatcagtcagtta
gaagaatggctgcgagggaagaatttgcatccgagtggcgctgctcagactatggagccg
ctgatccaagcagcacagttactgcaactcaaaaagaagacagaggaggatgcagaggcc
atatgctctttgtgcacagccctgacgacccagcagattgtgaagatactgaatctgtac
acacccgtgaatgagtttgaagagcgagtaaccgtgtcctttatcagaatcattcaggct
cagctgcaagagcggaacgatcctccccagctgctaatggactctaagtacatgttccca
gtcctgttcccattcagcccctcggccatcactttggacaccattcagatccctccttcc
ctcaaactggatttcctcatgaaggtctga
DBGET
integrated database retrieval system
