Xenopus tropicalis (tropical clawed frog): 100379843
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Entry
100379843 CDS
T01011
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100379843 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100379843 (edc4)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100379843 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
100379843 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
Beta-prop_HPS5
CelTOS
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WD40_Prp19
SLX9
Motif
Other DBs
NCBI-GeneID:
100379843
NCBI-ProteinID:
XP_002935417
Xenbase:
XB-GENE-5839769
UniProt:
F6UYC3
LinkDB
All DBs
Position
4:41313440..41378124
Genome browser
AA seq
1383 aa
AA seq
DB search
MASVTSIDVDATQHLRDILKLDRPEDSVNGNQRKSNSSFSSDLNGLLVTDQVAAVGTSLS
DTNLCSAAVLSSERQIICLSGDDSSSCIEITAKDVEIVASHDSNICSKARGSNKVKIQPV
AKYDWEQKYYCGNLIAVSNDYIAYATRGANGSAMVRVLSLTTAERILLKGITGSVTDLAF
AHLKSNHLACLDEAGSLFVWQLSMTNGKIQDDIVVHIRRPENTVLSNFRRIIWCPYIPEE
SEENVVDDTSQTVALLHEDKAEVWDLEIVRANHSTWPVDVSEIKEGFIIVKGHSGRLSEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPHNGRPLSCLLFCDNHKKQDPE
VPFWRFLITGADQNRELKVWCTVSWTSLQTIQFSPDPFSSGILPGLKASLDLSAEFLILT
DVQRKVLYVMELKQNQDEGKATFTSISEFLLTHPVLSFGIQDVNHCRLRNTEVLPSEEDN
NSISQEEPLECESVESAAGVLIKLFCVHTKALQDVQIWFQPRQNTEPAILGTSQPTQEDF
ALPDHIQGINKERMSSTQGSLHGSQSELCRITTDFLLLSTDSAPKLMTPDAFMSPSVSLQ
QGISSPGSIISTLTAVTPISNTSSSDTVLSRPSEEMTLSTMLQLDTSRDGTLQSSSRNSA
VVIPGMSETSVSKPAAQLVSSNHPLELQDLDPLVVPQASPTRERSPDVISSASTAIPQDI
PEIASETLQRSYISSVPLGLSVEGCDSSHHSDSMSSAASALHLLSPHNLSLDHGHRPIII
GSSVVENERINAPSLLESKIQEDNVDIGLPQPWPAAPDITKETRNSLDSSRNGQDRGDNS
FHRHNYHLLQQHDSQDASAEQSDHDDEVASLASISGSFGGKGQHLPIKDWKSKLSPRSSP
KLRRKSKKDEMELTQSPRISDHMANYELQEELLCMLRNQQKELCDLRQNQLELMKKLTDH
MDAVQSSIMGHVERVIDTQQEQEQRRVERILSDGHERNGQLQEYLSQQLSHSLSGSLCNR
VDKIIREEMKKTISQCITKTLDPVTAQLTSTVAAKVTAVEGVLKENVTKMVKSKNVTDAI
GRVAAESLQAVIQSSYREAFQSIVLPAFERSCQSMFQQINGSFKQGTQEYMQQLEAHLRS
RKMNEQETRDPLVTQLQQMVDSLQSITDQLASNIASNVRTEVQHQIHIAVGNMQDSILSQ
VQRIIKEEVSHAMKEQQAAVTSSIMQAMRSAAGTPIPSSHMDFHSQQTHILQLMQQGQIN
KAFQQALTASDLNLILYVCETVDPQQVFGQHPCPLSQPVLLSLIQQLSFDLGSRTEIKLN
YLEEAVMHLDHSDPVTRDHMGTVLNQVRQKLFQFLQAEPQNALQKPARRLLIMLQGLALP
TLS
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagttaccagtattgacgtggacgcgactcagcatctaagggatatcttaaaa
ctagaccgacctgaagattcagttaatggaaaccagaggaaatctaactcctccttcagc
agtgatctgaatggtcttcttgttactgatcaagttgcagctgtgggtacctccttgtct
gatacaaacctctgcagtgctgcagtgttgagttcagaaagacagatcatttgcctatct
ggagatgacagctcttcttgcattgaaatcactgctaaagatgtagaaatcgttgccagc
catgactctaatatatgcagcaaagcaagaggcagcaacaaggtcaaaatacagccggta
gctaaatatgattgggaacagaagtactactgtggcaatctgatagcagtatcaaacgac
tacattgcatatgctactagaggtgctaatggatccgccatggtcagagttctaagcctt
acaaccgctgagaggatcttactgaaaggcattacaggaagtgtaactgacttggcattt
gcacatctcaaatctaaccatctagcatgtttggatgaagcaggtagcttatttgtgtgg
cagttgtcaatgacaaatggaaaaatccaagatgacattgttgtgcatatacgaagacca
gaaaacactgtgttaagtaacttccgcagaattatctggtgcccgtatatcccagaagaa
agcgaagagaatgttgttgacgatacaagccaaacagttgccttgctgcatgaggataag
gctgaagtgtgggatttggaaattgtgcgcgcaaaccacagcacttggccagtagatgtc
agtgaaatcaaagaaggattcataattgtgaagggacattctgggcgtctaagtgaaggt
gcactttctcctgatggaacagtcctggccacagctagccatgatggctatgtgaagttc
tggcaaatatacatagagggacaggatcaaccaaggtgtctgcacgagtggaagcctcat
aacggaaggcctctgtcctgtctactgttttgtgacaatcataaaaaacaagacccagag
gttccattttggaggtttttgatcacaggagcagatcaaaacagagagctaaaggtgtgg
tgcacagtctcctggacaagtctgcaaacaatccaattttctccagatccatttagttct
ggtattttgcctgggcttaaagcatcattggatttgtctgcagaattcctgatactgact
gatgttcagcgaaaggttttgtatgtaatggagctaaagcagaatcaggatgaaggaaaa
gctacctttacatccatttcagaattcttgctcacacacccagtcctcagttttggtata
caggatgtgaatcattgtcgtctccggaacactgaagtattgccatcagaagaagacaac
aacagtatcagccaagaagagcccctggagtgtgaatcggttgaatctgctgctggtgtg
cttataaaactgttttgtgtacatacaaaagcactgcaagatgttcagatctggtttcaa
ccccgtcagaatactgaacctgctatattgggaacatctcaaccaacacaggaagatttt
gcccttcctgatcatatccaaggcatcaacaaggagagaatgtcttccacgcagggatct
ttgcatggctcccagtcagaattgtgcaggatcactactgacttcctactcctttctact
gactctgcgcccaaactaatgacacctgatgcgttcatgagtcccagtgtatcactacag
cagggcatttcctctcctggaagcatcataagcacacttacagcggttacacccattagc
aatacctcaagcagtgatacagtcctgtcaagaccatctgaggagatgactttaagcaca
atgttgcagttagacacttcgcgtgatggaaccctacagtccagttcaagaaattcagct
gttgtcatcccaggaatgtctgagacatctgtatcaaaaccagctgctcagttggtgtcc
tccaaccatcctctagagctgcaagatttggaccctttggttgtaccacaggcttctccc
acacgtgaacgttctcctgatgtcatatccagtgcatccactgcaatacctcaggacatt
ccagagattgcctctgagacactgcaacgtagttatatttcttctgtacctttgggcttg
tctgttgaaggatgtgactcctcccatcatagtgacagcatgagctcggctgcatctgca
ttgcatttgctttctccccataatctttctttagatcatggacacagaccaataattatt
ggatcttcagtagtggagaatgagcgaatcaatgcaccatctttgctagagagcaaaatc
caagaagataatgtggatataggtttaccacagccttggcctgcagcacctgacattacc
aaagagacaaggaatagtttggacagttcaagaaatggtcaagacaggggagacaactct
tttcacagacataactaccatttactacaacagcatgacagtcaagatgccagtgctgaa
cagagtgatcatgatgatgaagttgctagtttggcgtcaatttctggaagctttggaggc
aagggtcaacatcttcccattaaggactggaagagcaaattatcaccacgttcatctcca
aaactacgtcggaagtcaaagaaagatgaaatggaactgacacaatctccacgaatttca
gaccatatggcaaattatgagttacaagaagagttgttatgtatgttgcgcaaccaacaa
aaagaactttgtgatctacgtcaaaatcagctggaacttatgaagaaacttacagaccat
atggatgcagtgcagagctccataatgggacatgttgaacgtgtaattgatactcagcaa
gagcaggaacaaaggagagttgagcgaattttaagtgacggacacgaaaggaatggtcag
ctgcaggaatacctttcacaacaactttctcattcgttgtctggatctctttgtaaccgt
gtggataagatcataagggaagagatgaaaaagactatttctcagtgtattaccaaaaca
ttggatccagtaacagcgcagttgactagtacagtggcagcaaaagttactgccgtggag
ggggtactgaaggaaaatgtcaccaagatggttaaatcaaaaaatgttactgatgccatt
ggtcgagtagctgcagaatctcttcaggcagtcattcagtcttcatacagagaagctttt
caaagtattgttcttcctgcctttgagaggagctgtcagtccatgtttcagcaaataaac
ggcagtttcaagcaaggcacccaggaatatatgcaacagctagaagctcatctaagaagc
agaaaaatgaatgagcaggaaacacgtgaccctctggtgacacagctccaacagatggta
gatagccttcagtccataacagatcagctggcatccaatattgctagcaatgtacgcact
gaagttcaacaccagatacacattgcagtgggaaacatgcaggactctatcctatcacag
gtacaaagaatcatcaaggaggaagtgagccatgctatgaaagagcagcaagcagctgtc
acatcgagcattatgcaggctatgagatctgcagcaggaactcctatcccatcctcacat
atggattttcactcccagcagactcacatcctgcaacttatgcagcaaggtcaaatcaac
aaggctttccagcaggcactgacagcctcagacctaaaccttatcctttatgtttgtgag
actgtagacccacaacaagtatttgggcaacatccatgccctctcagtcagcctgtcctt
ctgtccctaattcagcaactatcgtttgaccttggcagtcgtacagaaattaagctcaat
tatctggaagaagcagtgatgcatctagatcacagcgatcctgtgaccagagaccacatg
gggaccgttttaaatcaagtgcggcaaaaacttttccagttcttgcaagctgaacctcag
aatgctttacaaaaacctgctcgacgtctgttgataatgctacaaggactggcgcttcct
actctgagttaa
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integrated database retrieval system
