Xenopus tropicalis (tropical clawed frog): 100379921
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Entry
100379921 CDS
T01011
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100379921 (taf1b)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
100379921 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
zf-RRN7
Rrn7_cyclin_N
TF_Zn_Ribbon
DUF3810
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-GeneID:
100379921
NCBI-ProteinID:
XP_002938934
Xenbase:
XB-GENE-992275
UniProt:
F7BLM1
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Position
5:138010867..138063832
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AA seq
596 aa
AA seq
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MEEEDARGYNKPCPQCSEVNWAISDEGTFYCKSCHTVIEKTREVDDTEVFSTHGKLQSIS
RGLRKKRKLEKGWEWYVCEGFQFILIKQAEALQALGVAPQIKDEILCTFWRRYLQKTNQA
YVKRPVYRSVLTCRDSDSSATEVDSDLEAFSIGTSSVSDGYTSDASGRLSLPTEDIPSAS
ESAVSVHSGSVDGLSHVKMRKNFKPWNYVKMTMPMTLAFCYLALLWLRASITLSDLLRFV
FEKHIPYINAHQYLPEEIKVYGHDVRIFRMQALPVYNDILSKAYELGAFLDLPQFPPITK
NCYLHPSVLCMKYLIEANLPDELQQWTCQVAEKTGIDDFHRLTFDPACKRASHIRYDVQA
VALIILVLKLLFALDDNTEWQLSKFAERMNQSNKEKTVFDLQSWYQTVRQCYEKAQQKLE
EEYGRFMWKSDCPLYYSQTTKSLLQKRKQMSENLQRQFSKLAGAAPNTGKQGPSSFLFKW
EEQNTDTISFHGHSLQAVLHQGKKPPTPINTHYWLNSLRKCKTRICQHSELYEESNFPRS
YHFMVCLFAFLLRVEHCVIHHEVGLIEELFFQEKKNKRKQKPKKQEMTDFREVPPD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaagacgctagaggctacaacaagccttgtccgcaatgttctgaggttaac
tgggcaataagtgatgagggcacattctactgcaagagctgccacactgtcatagagaaa
accagagaagttgatgatacagaagtattttcaacccatggcaaacttcagtccatctca
agaggcctacgaaaaaagagaaaactagagaagggctgggaatggtacgtttgtgaaggg
tttcaattcattctcattaagcaagctgaagcactgcaggctttgggagtggctcctcaa
ataaaggatgaaatcctatgtacattctggaggcgatatcttcagaagaccaatcaggca
tatgtcaaaaggccagtttatagaagcgttcttacttgtagagactctgatagcagtgct
actgaggtggatagtgacttagaagcttttagtataggcacttcatctgtttctgatggg
tatacctctgatgctagcggtaggctgtctttaccaactgaggacatcccctctgcatca
gaaagtgcagtgagtgttcattccggctctgtagatggtctgtcacacgtgaaaatgaga
aaaaattttaaaccatggaactatgttaaaatgaccatgcctatgacattggctttctgt
taccttgctttgctgtggctgagagcttctatcacactctctgatttattacgatttgtt
ttcgaaaaacacattccgtacataaatgcacatcaatatctgccggaagaaataaaagta
tacggacatgatgtcagaatattccggatgcaggcccttccagtttataatgatatcctg
agcaaggcttatgaacttggagcctttttggatttgcctcagttccccccaataacgaaa
aactgttacttacaccccagtgttctttgcatgaagtacctgatagaagccaacctgcca
gatgagctacaacaatggacttgccaggtagcagagaagacaggaattgatgatttccat
cgcctgacatttgatcctgcatgtaaaagagcaagccatatccgctatgatgtacaagct
gtagctttaataatactcgtactgaaactgttatttgccctggatgataacacagaatgg
cagttgtcgaagtttgctgaaagaatgaatcaaagcaacaaagagaaaacagttttcgat
ctacaaagctggtaccaaactgtgaggcagtgctatgagaaagcccagcagaagctggag
gaagaatatggcaggttcatgtggaaaagtgattgtccattgtattactcccaaactact
aaatctttgcttcagaagaggaaacagatgtcagagaacctgcagaggcagtttagcaag
ctggcgggagctgcacctaacaccggcaagcaaggcccatcaagtttcttgtttaaatgg
gaagagcaaaacacagacacgatttcttttcatggacacagcctgcaggccgttctgcac
caaggcaagaaaccacctacaccaataaacacacattattggttgaactcactgaggaaa
tgtaaaaccaggatatgccagcactccgagctttatgaagaatccaacttcccgaggagc
taccacttcatggtgtgcttgtttgccttcctgctgagagtggagcactgtgtcatccat
catgaagtgggtctcatagaagaactgtttttccaggagaagaagaataaacggaaacaa
aagcccaaaaaacaagaaatgacagactttagggaggtccctccagactga
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