Xenopus tropicalis (tropical clawed frog): 100379926
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Entry
100379926 CDS
T01011
Symbol
pola1
Name
(RefSeq) DNA polymerase alpha catalytic subunit isoform X2
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100379926 (pola1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xtr03032
]
100379926 (pola1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100379926 (pola1)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
100379926 (pola1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DNA_pol_alpha_N
DNA_pol_B_2
DUF1744
Motif
Other DBs
NCBI-GeneID:
100379926
NCBI-ProteinID:
XP_012813086
Xenbase:
XB-GENE-1000548
UniProt:
F6Z608
LinkDB
All DBs
Position
2:complement(40720026..40871928)
Genome browser
AA seq
1480 aa
AA seq
DB search
MHLVFCAPRSTVFPPYLDMSESGSFAASRSRREKTEKSGRKEALERLKRAKAGEKVKYEV
EEISSIYEEVDEEQYSKIVRDRQDDDWIVDDDGTGYVEDGREIFDDDLEDNALADSGKRA
KGAPKDKSNVKKSSVSKPNNIKSMFMASAVKRTTDKTVDLSKDDLLGDLLQDLKSQALPI
TPPPVITLKKKKLAGSPLNPFSVPPAAPKVLPVKKPPALAKLGHLSSAAPSNNSASSFVP
REIKNEPNSDLISSAPLNVKTQVKEEDTSMVEFDDGDFDEPMEEDNLESPSVVSSTIKKE
EPKIKCVKEDSVKMEESSFMTSAALNESCWDQIDEVESMTTEVQVDSSRLPLVTGADGSQ
VFKFYWLDAYEDQYSQPGVVYLFGKVWIETAEAYVSCCVSVKNIERTVYLLPRENRVQLS
TGKDTGVPVSMMNVYQEFNESVAEKYKIMKFKSKKVEKDYAFEIPDVPASSEYLEVRYSA
DSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSSQPMSWCKVEAV
VMRPDQVNVVKDLAPPPVVVLSLSMKTVQNAKTHQNEIVAMAALVHHKFPLDKAPPQPPF
QTHFCVLSKPNDCIFPYDFKEAVKRKNANIEIALTERTLLGFFLAKIHKIDPDIIVGHDI
YGFDLEVLLQRISSCKVPFWSKIGRLRRSVMPKLGGRSGFAERNAACGRIICDTEISAKE
LIRCKSYHLSELVHQILKTERVLMPPENIRNAYSDSAHLLYMLENTWTDAKFILQIMCEL
NVLPLALQITNIAGNVLSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKKIQQTTVED
DDNMDTDQNKNKKGRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTTV
QREAPTSQKGEDQEEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDLYLQY
DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQKMNLEVIYGD
TDSIMINTNCNNLEEVFKLGNRVKSEVNKSYKLLEIDIDGIFKSLLLLKKKKYAALTVEP
TGDGKYVTKQELKGLDIVRRDWCELAKEAGNYVISQILSDQPRDNIVENIQKKLTEIGEN
VTNGTVPISQYEINKALTKDPQDYPDKKSLPHVHVAMWINSQGGRKVKAGDTISYVICQD
GSNLSASQRAYAPEQLQKQENLSIDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGLD
PSQFRAHRHHQQDEENDALLGGPSQLTDEEKYRDCERFKFFCPKCGTENIYDNVFDGSGL
QIEPGLKRCSKPECDASPLDYVIQVQNKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRVP
LSFSRNGPICQACTKATLRSEYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKKKH
FQESENLYKKLKSTVDQVLSQSGYSEVNLSKLFQTLSTIK
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgcacttggtgttctgtgcgccccgcagtaccgtcttccctccttaccttgacatgtca
gaatctggaagttttgcagcatcacgttcgcggcgtgaaaaaacagaaaagagcggccgt
aaagaagcattggaacgtttgaaaagagcaaaagctggtgaaaaagtcaaatatgaggtg
gaagaaatttcaagcatttatgaggaggtggatgaagaacaatactctaaaattgttcgt
gaccgacaggatgatgattggatagtggatgatgatgggaccggttatgtagaagatgga
agagagatttttgatgatgacttagaagacaatgctcttgctgattcaggtaaaagagct
aagggagcacccaaagataaatctaatgtaaaaaagtcatcggtgtcgaagccaaataat
atcaagtcaatgtttatggccagtgctgtcaaaaggacaacagataaaactgtggatctg
tcaaaagatgacttgcttggtgatttactgcaagatttaaagtcacaggctcttcctata
acaccacccccagtaattactctaaagaagaagaaacttgcagggtctcctttaaaccct
ttctcggtaccacctgctgccccaaaggttttacctgtgaaaaaaccaccagctttagca
aagcttgggcatctctcaagtgctgcgccatctaacaactctgccagttcttttgtaccc
cgggaaattaagaatgagccaaattctgatttgatttcttctgctcctttgaatgtgaaa
actcaagtaaaagaagaggatacgtcaatggttgagttcgatgatggagattttgatgaa
ccaatggaagaagacaatttggaatctccttcagttgtttctagcacaattaagaaggaa
gaaccaaaaattaagtgtgtgaaagaggatagtgttaaaatggaggaaagttctttcatg
acttccgctgctttaaatgaatcttgttgggatcaaattgatgaggttgaatcaatgacc
actgaagttcaggtagattcaagccgcctacccttggttacaggtgcagatggaagtcag
gtgtttaagttttattggctagatgcctatgaagaccagtacagtcagccaggagtagtc
tacttatttggaaaagtttggatagagacagctgaggcgtatgtcagctgctgtgttagt
gtgaagaacattgagaggactgtatatctcctacctcgtgaaaatagagtgcagctttct
acaggcaaagacactggagtaccagtgtctatgatgaatgtataccaggagtttaatgaa
agtgttgcagaaaagtacaaaatcatgaagttcaagtctaagaaagttgagaaggattat
gcttttgaaattcctgatgttccagccagctctgaatatctagaggttcgatattctgcg
gactcacctcaacttcctcaggatctaaaaggagaaacattttcacatgtgtttggaaca
aatacttcaagcctggagcttttcttgcttagcagaaaaataaaagggcccagctggctg
gagataaaaagcccacagctgagcagtcagcccatgagctggtgcaaggttgaggcagtg
gtgatgaggcctgaccaagtgaatgttgtgaaggatctggcacctccacctgttgttgtt
ttgtcgctcagtatgaagactgtgcagaatgcaaagactcaccaaaatgagattgtggca
atggctgctttggttcatcacaaatttccccttgataaagcaccaccacagccaccattc
cagacacatttttgtgttctgagcaaacctaatgattgcattttcccatacgactttaag
gaagcggtgaaacgaaagaatgcaaatattgagattgcgttaactgaacgaactctactg
ggctttttcctagcaaaaattcataaaattgatccagatattattgtaggccatgacatt
tatggttttgatctcgaagtgttgcttcaaagaattagctcgtgcaaggttcctttctgg
tccaaaatcggtagactgagaagatctgttatgccaaaacttgggggtcgaagtggcttt
gcagaaaggaatgcagcttgtggtcgcatcatttgcgatactgagatttctgccaaggag
ttaattcgatgtaaaagctatcatttgtcagaactggtacatcaaatattgaaaacagag
agagttttgatgccaccagaaaacatccgcaatgcatacagtgattcagcacatcttctt
tacatgctggagaacacctggactgatgcaaaattcatccttcagatcatgtgtgagctg
aatgttcttcccctggccttgcagatcacaaatattgcaggcaatgtcttgtcaaggaca
ttaatgggtggacgctcagaaagaaacgagtaccttctccttcatgccttcacagaaaat
aacttcatagtgccagacaagccagtgttcaagaaaattcaacagaccactgtggaggac
gatgataatatggacacagatcaaaataaaaataagaaaggtcgaaagaaggctgcctat
gctggaggattggtcctggaacccaaagttggtttctacgacaaattcatcttgcttctg
gatttcaacagcttgtacccctctatcattcaggaatataatatctgctttacaacagtg
caaagagaggctcctacttcacagaaaggtgaagatcaggaagaaattccagagctacct
cattctgatcttgaaatggggatcttaccacgagagatacggaaactggtggagaggagg
cgtcacgtgaagcagttaatgaagcagcctgacctaaaccctgatttatacttacagtat
gacatcagacaaaaagctttaaagctcacggcaaacagcatgtatggatgcctgggcttc
tcctacagcaggttctatgccaaacctttggctgcattggttactcaccaagggagagag
attttgctgcataccaaggaaatggtacagaagatgaatctggaagtcatatatggagac
acggattctatcatgataaacaccaattgtaataatttagaagaagtcttcaagcttgga
aaccgggtgaaaagtgaggtaaacaaatcatacaaacttttagagattgacattgatggt
atctttaaatcactcttgctacttaagaaaaagaagtatgccgctctgactgtggagcct
acaggtgatggaaagtatgttactaagcaggagcttaaaggtttggatattgtcagaaga
gactggtgtgaacttgctaaagaagctggaaattatgttatcagtcagattctgtctgat
cagccacgtgacaatattgttgagaacattcagaagaaattaactgaaattggggagaat
gtaacaaatggaactgtgcccattagccagtatgaaataaacaaggcattgacaaaggat
cctcaggattaccctgataaaaaaagcttacctcacgtacatgttgccatgtggataaat
tcccaaggtggaagaaaggtgaaagctggtgatacaatatcctatgtcatttgccaggac
ggatcaaatcttagtgccagccagagagcatatgctccagagcagctgcaaaaacaagag
aacctttccattgacacacaatactacctgtcacagcaagtccacccagtagtggctcgg
atctgtgagcccattgatggaattgattctgcactcattgcaatgtggttaggacttgac
ccctcccagttccgggctcaccgccaccatcagcaggatgaggaaaatgatgcattgttg
ggaggtccttcccaactcacagatgaggaaaaatacagagattgtgaacgattcaaattc
ttctgcccaaagtgtggaacagagaacatttatgacaatgtttttgatggctctgggctg
cagattgaacccggcttgaaacgctgcagtaaaccagagtgtgatgcttctcccttggac
tacgttattcaggttcaaaacaagctgctcttggacataagacgttacataaagaaatac
tacagtggttggcttgtatgtgaagaaaaaacctgccagaacagaacacgacgagttcct
ctgagcttctcccgcaatgggccgatatgccaagcttgcactaaagcaacgctaagatca
gagtatccggaaaaggccctgtacactcagctttgtttctatagattcatttttgactgg
gattatgcactggagaaagttgtttctgaacaagagagaggtcacttaaaaaagaagcat
tttcaagagtcagaaaatctgtacaagaagttaaagagcactgtcgaccaagtactttca
cagagcgggtattcagaagtgaacctcagcaagctgttccaaacactcagcaccattaaa
taa
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