Xenopus tropicalis (tropical clawed frog): 100380023
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Entry
100380023 CDS
T01011
Symbol
pus1
Name
(RefSeq) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xtr03016
]
100380023 (pus1)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
100380023 (pus1)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
100380023 (pus1)
Prokaryotic type
100380023 (pus1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
WC-rich
DUF2344
Motif
Other DBs
NCBI-GeneID:
100380023
NCBI-ProteinID:
XP_002931922
Xenbase:
XB-GENE-963672
UniProt:
A0A8J0QIQ7
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All DBs
Position
1:complement(156611376..156616696)
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AA seq
399 aa
AA seq
DB search
MADPEKESLLKNVTTGDIRKACVLQEESEGQEKNGHQAKKFKADQEELSKKHPKRKVVLL
MAYSGKGYHGMQRNVGSSQFKTIEDELVQALVLSGCIPDNHAEDMKKMSFQRCARTDKGV
SAAGQVVSLKIWLIDNVVEKINENLPSHIRILGLKRVTGRFNSKNSCDARTYSYTLPTFA
FSHKDKEAQDENFRLSQETLNRVNELLALYKGTRNFHNFTSQKGPRDPSAKRYIMEMHCE
PPFQQGGLELAVIKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIERSWGEEKVDIPKAP
GLGLVLERVHFEKYNRRFGNDGLHESLNWTEEEEKIESFKKEHIYPTIIQTEIDEKSMLA
WLATLPIHDYDATSVQQNQDNHKAEGAVAGISDEEIESD
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcccgagaaagagtctttgttaaaaaacgttaccacaggggacatcaggaag
gcatgtgttctccaggaggagtcggaaggacaggaaaaaaatggacaccaagctaagaaa
tttaaggctgatcaagaggagctgagtaagaagcatcctaaacggaaagtagttctctta
atggcctactctgggaaaggctaccatggcatgcagagaaatgtgggttcctcccagttt
aagaccatagaggatgaacttgttcaagcattggttttgtctggatgtatccctgacaat
catgcagaagacatgaaaaagatgtcatttcaacgttgtgctcgcacagataaaggggtt
tccgctgctggacaagttgtatccctaaagatttggttgatagataatgtagttgaaaag
attaatgaaaatctgccctctcatattaggatacttggattgaagcgagtaacaggcagg
tttaactcaaagaacagctgtgacgctcgcacctactcttacacattgccaaccttcgct
ttctcacataaagacaaagaggcacaagatgaaaactttcgactgagtcaggaaacgcta
aacagagtaaatgaacttcttgcactttacaaaggcactcgcaactttcacaactttacc
tctcagaaaggaccaagagatcctagtgcaaagcgctatatcatggaaatgcattgtgag
cctccttttcagcaaggggggctggagttagcagtgatcaaggtaaaaggccaaagcttt
atgatgcaccagatccgcaaaatgattggattagtcattgctgtggtgaagggctttgct
cccacatccatcatagaacgtagctggggagaagaaaaagtggacattcctaaagctcct
ggtttaggtctggtacttgagagggttcactttgaaaagtacaacagacgctttggaaat
gatggacttcatgaatctctgaattggacagaagaagaagaaaaaattgagtcttttaag
aaggagcatatttaccccactattattcagacggaaattgacgagaagtctatgcttgct
tggctcgccactctgcccatccatgactatgatgccacatctgtacaacaaaaccaagac
aaccataaggcagaaggagcagtggctggaatcagtgatgaagagatagaatcggattga
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