Xenopus tropicalis (tropical clawed frog): 100380043
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Entry
100380043 CDS
T01011
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100380043 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100380043 (msh2)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100380043 (msh2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
100380043
NCBI-ProteinID:
XP_002935427
Xenbase:
XB-GENE-977518
UniProt:
A0A8J0QMV2
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Position
5:20761411..20836090
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AA seq
932 aa
AA seq
DB search
MAVQPKEKLSMDSGAENGFISFYQSMPEKPDTTVRVFDRNDYYTVHGGDAIFAAKEVFKT
NGVIKYLGSGSKKLESVVLSKMNFESVVKDLLLVRQYRVEVYKNKSGGKSSKENDWQLAF
KASPGNLTQFEEILFGNSDMSTAVGVVGIKLVSAEGQRLVGVGYVDSTLRKLGVCEFPDN
DQFSNLEALLVQIGPKECVMPGGDTAGDMGKLRQIVKRGGILITDRKKAEFTTKDSVQDL
NRLLKAKKGEQVTSAALPEMEKQVAMSALASVMKYLELLSDESNFGQFVMTNFDLSQYMK
LDNAAVGALNLFPGSAEDTSGTQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN
LVEAFVTDAELRQCLQEDLLRRFPDLNRLAKKFQRQTANLQDCYRLYQAVNQLPGVIQAI
EKYEGTHQMLLLAVFATPLSDLSSDFSKFQEMIETTLDMDQVENHEFLVKASFDPNLTEL
REKMNELEKNMQAALNGAARELGLDAGKSIKLESNSQVGHFFRVTCKEEKALRNNKKFTT
IDIQKNGVRFTNGKLSSLSEEYMRNREEYEEAQNAIVKEIISISAGYVDPIQTLNDVIAQ
LDAAVSFAYVSNSAPVPYVRPVILEKGQGKIMLQSARHPCIEMQDDVAFIPNDITFEKEK
QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGSFVPCDSAEISIVDCILARVGAGDSQLKG
VSTFMAEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYISTKIKAFCMFA
THFHELTALADQVPTVNNLHVTALTTEDTLTMLYRIKRGVCDQSFGIHVAELANFPKHVI
ETAKEKALQLEEFQFVGNPDDCDDEPTRKRRCKEKEEGEKIIQDFLSRVKALPLTEMSEE
EIKSKLQQFRSDVLARNNSFVHEVISRTKPGL
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgcagcccaaagagaagctgtctatggacagcggggccgagaatggcttcatc
agcttctaccagtccatgcccgagaagcccgacaccactgtgcgggtgttcgataggaac
gactactacacggtgcacggaggcgatgcaatctttgccgctaaagaagttttcaagacc
aatggggtgatcaagtacttgggatcaggaagcaagaaactggagagcgtggtgctcagc
aaaatgaacttcgagtctgtagtaaaggatctgcttctggttcggcagtatcgagtagaa
gtttataaaaataaatctggaggcaaatcctcaaaagagaatgattggcagctggctttt
aaggcctcaccgggtaatcttacacagtttgaggagattctgtttggaaacagtgacatg
tccacagccgttggcgtagttggtatcaagctggtcagtgctgaaggccagaggttggtt
ggggttggttatgtggactccacactgagaaagctaggagtatgtgaatttccagataat
gatcagttctctaatctggaagctttgttggttcagattggcccaaaggaatgtgtaatg
cctggaggagacacggctggagacatggggaaattgaggcagattgttaagagaggtggg
attctgattacagacagaaagaaggcagaattcaccacaaaagacagtgtacaagacctt
aatcgtctgcttaaagcaaagaaaggagagcaggttacaagcgctgcattaccagagatg
gagaaacaggttgcaatgtcggccttggcgtcagtcatgaagtatttagaactgttgtct
gacgagtcaaactttgggcagtttgtgatgaccaactttgacctgagccagtatatgaag
ctagataacgcagctgtgggtgcgctcaaccttttccctggatctgctgaagataccagt
ggcacacagtcattggcagggcttttaaataagtgcaaaactcctcaagggcaaagactg
gtcaatcagtggattaaacagcctcttatggacaagaacagaattgaagaaaggttgaac
ctagttgaagcttttgtgacggacgcagaactaagacagtgccttcaggaagatctgctc
cgtcgctttccagatcttaatcgcttagcgaaaaaattccagagacagactgctaacctg
caggattgctatagactttaccaggctgtgaatcagcttccaggtgttatacaagcaatt
gaaaaatatgaagggacccatcagatgctactgctggcggtatttgcgacacccctttct
gatctttcatcagacttctcaaaatttcaagaaatgattgaaaccacattggatatggat
caggtggaaaatcatgaatttcttgttaaggcctcattcgatccgaacctgacagaattg
agagagaagatgaatgaactagagaagaatatgcaggctgcactcaatggtgctgcaagg
gagctgggtcttgatgctggcaaaagcattaaactggaatcaaactcccaagttggccac
tttttccgggtaacatgcaaggaggaaaaggccttaaggaacaataagaagttcactaca
atcgacatacagaaaaatggggtcagatttactaacggtaaactgagctcacttagtgaa
gagtacatgagaaacagagaggagtatgaggaagcacagaacgctattgttaaagaaatt
ataagtatttctgctggatatgtggatccaattcagactctgaatgacgtcattgcacag
ttggacgctgcggtcagctttgcctacgtttctaacagcgcaccagtaccgtatgtccgg
cccgtcattttggaaaagggacagggaaaaattatgctccagtcggccagacacccatgc
attgagatgcaagatgatgtggcgttcattccgaatgatataacatttgaaaaggaaaag
cagatgtttcatattattactggtcctaacatgggagggaaatcgacatatatccgccag
actggtgtgattgtccttatggctcagattggttcctttgtaccctgtgattctgcagaa
atcagtatagtggactgcatacttgcacgagttggggctggagacagtcaactgaaagga
gtgtcaacatttatggccgagatgctagaaactgcctcaattctcagatctgctacagag
aattcgctgattatcattgatgaattgggtagaggcacctccacgtatgatgggtttggg
ctggcctgggcaatctcagaatatatttccactaagatcaaggctttttgcatgtttgct
acccattttcatgaactaacagccctggctgaccaagtgccaacagtgaataatttgcac
gttactgccctgaccacagaagataccttaaccatgctgtaccggataaagagaggggtt
tgtgatcagagctttggaatacacgtggcagagcttgccaactttcctaaacatgttatt
gaaactgcaaaggaaaaggcactgcaattagaggagtttcagtttgttggcaaccccgat
gactgtgacgatgaaccaactaggaagaggcgctgcaaagaaaaggaggaaggggaaaag
ataatccaggatttcctttccagagtaaaagctttgcctctgacagaaatgtctgaggaa
gaaataaagagcaagctgcagcagttcagatctgacgtcctggccagaaataacagtttt
gtccatgaggttatttccagaacaaaaccaggattgtaa
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