Xenopus tropicalis (tropical clawed frog): 100380046
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Entry
100380046 CDS
T01011
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
100380046 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100380046 (atrx)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100380046 (atrx)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
100380046 (atrx)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100380046 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
100380046
NCBI-ProteinID:
XP_002931858
Xenbase:
XB-GENE-980568
UniProt:
A0A6I8SPZ1
LinkDB
All DBs
Position
8:complement(45619999..45714718)
Genome browser
AA seq
2268 aa
AA seq
DB search
MTAEPMSESKLNTLVKKLHDFLAHSSEESEDTTSPTRQSVSRSAAKVKSVHRLHPMENNM
DEGSTSEKLKSLGSSRSKRKPSFVQKYVGSDEETVPDEVVNLDGSNENSENEVDMESLPI
GTVVVQPEPVLNEDKDDFKGPEFRSRNKPKPDITIPKKRTEDGLHGIVNCTACGQQVNHF
QKDSIYRHPALKVLICKACYKYYMSDDINRDADGMDEQCRWCAEGGNLICCDYCHNAFCK
KCILRNLGRKELSAIMDEEMKWECYICRPEPLLDSVTACDSVFENLEQLLQQNKKKMKSD
NEKNKSNEHSQNDSDKRNSSYNGQGKNVGDAHAGTLTYSYRALMVPKEMLKKAKKLIETT
TSLNASFVKFMKQGTANNELNPAEKLRQLKAFKSVLGDLKKAHEALEETLMEEIHSVDEQ
KKSKKSKETTSENKHAKEKKLGEEKQKEPKKIVAREKAKPSDSDNKQRDCDKNASNDTEQ
AEEALIQNGKNVDLTEEDTIKSEPCSAAADVTEVLATDAEGTDISVVMEEADENVDGKNE
KATVESDDNEGKQKSQKKKQKSMHDKPRENSPGNRKKSVDSPKKERESVLPEKTKEKKRA
DQCTESSKSGKSRTPQKKSKNAEATFEPNSTEALDMDIVSVPSSVPEDIFDSLDASLEQQ
NSLQDSVTSTAVSTPKCKEELKPLVKKQLIVQLTPVSLSNSPVKADSNSAGKSPKADIGS
DAETEAQNQNSASCDEVLENSSENDLEESALRRSPRVKTTPRRRQTDANSAASNTEEESN
DTDKEKKSKRAACSKEKRNSTAKHSPAESGESPKAKRSLAKKMQAQVNKSTSDSDEVPEV
LKKAALMSNSSSELDSSNEANSGKRTSNRQDKTAKGYSKRKRSSSSSGSEPAKRTTRNST
AAKKKRGDQSDTSNSELEKEVKKLGKKDSVRKGLKQKSKKKEENSESSDEKNQNRSQKAK
KSKRVRTPASNKKESSSDLSEEEQENSHNSDEDSDEQKIKPLVENEVVSATGFVQSSGDE
AGTKCGAAPTEEDDDDDDDPENRIAKKMLLEEIKANLSSDDVEEASSDEEPEEGKKSVAK
STTKTEDKDVNEDDKSDSDSDSDSDSDSESEKKPRYRHHLLRRKISLSDGDSGEEKEKKD
KAKNSKNGKRRNRRKVSSEESASDFHKSSGVSEEISESDDSDDQRPRTRAAKKEAEENQR
SYKQKKKRRRIKVQDDSSDSKSNKGNSEDGDHDEDSDSKSPGKGRKKIRKIIKDDKLRTE
TQNALKEEEERRKRIAERERERDKLRELQVVDTEDVSPVKCPVTTKLVLDENEETKEALV
QVHQKMVTKLKPHQVDGVQFMWDCCCESMKKTKKDPGSGCILAHCMGLGKTLQVVTFLHT
VLLSEKLDFSTALVVCPLNTVLNWLNEFEKWQDGMDDEEKLEVCELATVKRPQERSYMMQ
RWHQEGGILIIGYEMYRNLTQGRNVKSKKLKEIFHKTLVDPGPDFVICDEGHILKNELSA
ISKAMNSIKTRRRIILTGTPLQNNLVEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCA
DSTLVDVRVMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYVLSVRISPLQCKLYQYY
LDHLTGAVGEGGVRGKSGTKLFQDFQVLSRIWTHPWCLQLDYISKENKGYFDEDDSMEEF
IASDSEESSMSLSSEEEVVNKKKAKGKGKRENSSSEEESDNDVEVIKVWNSRSRGGKGKD
LNDEEASNSPVVPKAEETKATSSSTPGSPAADWYKDFVTEADSSIMEHSGKIMLLFEILR
MAEVLGDKVLVFSQSLISLDLIEDFLELASTEKNEENASEKPVFYKGDGKWFRNIDYYRL
DGQTSPQTRKKWAEEFNDSTNIRGRLFLISTKAGSLGINLVAANRVIIFDASWNPSYDIQ
SIFRVYRFGQIKPVFVYRFLAQGTMEEKIYDRQIAKQSLSFRVIDQQQIERHFTMNELTE
LYTFEPDLLDDPNSEKKKKRETPMLPKDTVLAELLQILKEYIVTYHEHDSLLDHKEEEAL
TEEDRKAAWAEYEAEKKGLTNRFNVAAVTGANYAQVNINSQSSYMPLNLGALSSLSNQQL
EDLINQGREKVVEATNNIATARIQPLEDIISTVWKENPTATEAQVQSLALSRQSSQELEI
KRREAIYNDVLTKQQMLISCVQRILMSRRLQHQYNQQQQQQQIVFQQQAALNRLMMQKNP
NIIISPSNFSQIDMRGMYQAGMQGHQMQRNAPASIRAKNPGPSQGKKM
NT seq
6807 nt
NT seq
+upstream
nt +downstream
nt
atgacagcggagcccatgagtgaaagcaagttaaatacattggtgaagaaacttcatgat
tttctagctcactcctcagaagaatctgaggacacaacttctccaacaagacagtctgtg
agcagaagtgcagctaaagtcaagtctgtacaccgactgcatccaatggaaaacaacatg
gatgagggaagtacttctgaaaaactcaagtccttgggatcatctcgttcaaaaaggaaa
ccctcatttgtccaaaaatatgttgggtcagatgaagagactgtgccagatgaagttgtc
aatttagatgggtctaatgagaattctgagaatgaagttgatatggaaagcttgcccata
ggtacagtggttgtacaaccagaacctgtcttaaacgaagataaagatgatttcaaagga
ccagagtttcgaagcagaaacaaacctaaaccagatattactatacctaagaaacgcaca
gaggatggacttcatggtattgttaactgcacagcctgtggccaacaagtaaatcatttt
cagaaggattcaatttatcgacatcctgctttaaaagtgctgatatgtaaggcatgctat
aaatattacatgagtgatgacataaaccgggatgcagacggaatggatgaacagtgcaga
tggtgtgctgaaggaggaaacttgatttgctgtgattactgtcataatgccttttgtaag
aagtgcattctacgaaatctagggagaaaggaactgtctgctattatggatgaagaaatg
aagtgggagtgctacatttgccgaccagaacctttactggactctgtaactgcatgtgac
agtgtgtttgaaaatttagagcaattgttacaacaaaacaagaagaaaatgaaatcagac
aatgaaaaaaacaaatcaaatgagcactcccaaaatgattctgataaaaggaattcaagc
tacaatggacagggcaaaaatgtaggtgatgcacatgccggtactttaacgtattcttat
agagcccttatggtgccaaaggagatgctcaaaaaagcgaaaaagcttattgagacaaca
actagcctgaatgcaagttttgtaaagtttatgaaacaaggaactgcgaacaatgaattg
aaccctgctgaaaagttaagacagctgaaagcatttaaatctgtcctgggtgacttaaag
aaagcccatgaggctttggaggaaacattaatggaagagattcattcagttgacgagcaa
aagaaatctaagaaaagcaaagagactacgagtgagaataaacatgcaaaggagaagaaa
cttggtgaagaaaagcagaaagaacccaagaaaatagttgcacgtgaaaaagcaaaacct
tcagattctgacaataagcaaagggattgtgacaagaatgcctctaacgatacagagcag
gctgaagaagcgttgatacagaatgggaaaaatgtagatcttactgaagaagatacaata
aagagtgaaccctgttcagctgctgctgacgttacagaggttttggcaacagatgcagag
ggtacagatataagtgtcgtcatggaggaggcagatgaaaatgttgatggaaaaaatgaa
aaagcaacagttgagagtgatgataatgaaggtaagcaaaaatcccagaaaaagaagcag
aagagtatgcatgacaaacctagggaaaactcacctggtaacagaaagaagagtgtagat
tcacctaagaaagaacgggagtctgtgcttcctgaaaagactaaagagaagaaaagggct
gatcagtgcactgagtcttctaaatctgggaagtcgcgcacaccacaaaagaaatccaaa
aatgcagaggcgacatttgagcccaattccactgaagctcttgatatggacattgtttca
gtcccatcttctgtgccagaggatatatttgatagcttggatgcatcattagagcagcaa
aattctttgcaagattctgtaacgagtactgcagtatctacaccaaagtgcaaggaagaa
ctaaagccactggtcaagaagcagttgattgtgcagctgacaccagtgtctctatccaat
tccccagtgaaagcagacagcaatagtgcaggcaaatcgccaaaggctgacattggtagt
gatgctgaaacggaggcgcagaatcaaaatagtgcttcatgtgatgaagtccttgagaac
tcatcggagaacgatctagaggaatctgctctcaggagatcacctcgcgtaaaaactact
ccaaggaggcgacaaactgatgcaaattctgcagcctcaaatacagaagaagagagcaat
gacacagacaaagagaaaaaaagcaaaagggcagcatgttctaaagaaaaacggaattct
acagcaaagcatagccctgcagaaagtggggagagccccaaagcaaaaagatcattagca
aaaaagatgcaggcacaagtgaataagagtacttctgattcagatgaggttccagaagta
cttaaaaaggcagcccttatgagtaacagctcctcagagcttgatagcagtaatgaggca
aacagtggtaaaaggacttctaatcgtcaagataaaacagcaaaaggttattctaagaga
aaaagaagtagctcaagttctggttctgagccagccaaaaggacaactagaaactcaaca
gctgccaaaaagaaacgtggggaccaatcggacacttcaaattctgagctggagaaggaa
gtaaaaaaactcggtaaaaaagattctgtcaggaagggcttaaagcagaaatctaagaaa
aaggaagaaaacagtgagtcctctgatgaaaagaatcaaaatagatcccagaaagccaaa
aaatccaaaagagtgagaacacctgcctctaataagaaggaatcctcatccgacctttct
gaagaagagcaagaaaatagccacaattcagatgaagacagcgatgaacaaaagatcaaa
ccattagtggaaaatgaagttgtatctgccacaggatttgttcaatcatcaggtgatgaa
gcaggtacaaaatgtggggcagctcctactgaggaggatgatgacgatgatgatgaccct
gagaataggattgccaagaaaatgcttctggaagaaatcaaagccaatctgtcttcagat
gatgtggaagaagcatcctctgatgaagagccagaagaaggcaaaaaatctgtggcaaag
tcaactacaaaaactgaagataaggatgttaatgaggatgataagtccgattcagattca
gactctgactctgactctgattcagagtctgagaaaaaaccaagatatagacaccacctt
ttgcgccgcaagataagtttaagcgatggagattctggagaagaaaaagagaaaaaagac
aaagctaagaactcaaagaacggaaagcgtcgaaacagacggaaagtgagcagtgaggaa
tcggcctctgacttccataaatcatctggggttagcgaggaaatttcagagagtgatgat
tcagatgatcagcggcccagaacaagagctgcaaagaaagaagccgaagagaaccagcgt
agctacaagcagaaaaagaagagaaggcgaattaaagtccaagatgactccagtgatagc
aagagtaataagggtaattcagaggatggagaccatgatgaggactcagactccaaatca
cctggtaagggcaggaagaagattaggaagattattaaagatgacaagttgcgaacagaa
acacagaatgccttgaaagaggaagaggagagaaggaaaagaatagccgagagagagcga
gaacgagacaaactaagagagttacaggtcgttgatactgaagatgtctcgcctgtaaag
tgtccagtcactactaaactagtgttggatgaaaatgaagaaacaaaagaggctttggtg
caggttcaccaaaagatggttacaaagttgaaaccgcatcaggtagacggtgttcagttc
atgtgggactgttgctgtgagtctatgaaaaagactaaaaaggaccctggttctggctgt
atattggctcattgtatgggtcttggcaagactttacaggttgtgactttcctgcacact
gttcttctgtctgagaagctggatttcagcactgctcttgtggtgtgtcctttaaatact
gttttaaattggctcaatgaatttgagaagtggcaggatggcatggacgatgaagagaaa
ttggaggtctgtgaacttgctacagtgaagcgtcctcaggaaaggtcatacatgatgcaa
cgctggcatcaagaaggaggaatcttaataattggatatgaaatgtaccgaaaccttact
caagggaggaatgtaaaaagtaaaaagttgaaagagatttttcacaagacccttgtggat
ccaggacctgactttgtgatatgtgatgaaggacacatcctcaaaaatgaattgtcagcc
atttctaaggccatgaattccataaagacaagaagaagaatcatacttacaggaacccca
ctgcaaaataatcttgtagaatatcactgcatggtcaacttcatcaaggaaaacctactt
ggttccattaaggaattcagaaatcgtttcatcaatcccatccagaacggacagtgcgcc
gactctaccctagttgatgtcagagtgatgaaaaagagagctcacatcttgtatgaaatg
ttagctggctgtgttcagcgaagagattatactgcactaacaaagttcttgccaccaaag
catgagtatgtattgtctgtcagaatttccccacttcagtgtaagctttaccaatactat
ctggaccacttaacaggagctgttggtgaaggaggtgtaagaggaaaatctggaacaaaa
cttttccaggatttccaggtcttgagcagaatctggactcacccttggtgtttgcagctg
gactatattagtaaagaaaataagggttactttgatgaagacgacagcatggaagagttc
atagcttccgactctgaagaatcctccatgagtctgagttctgaggaagaagttgttaat
aaaaagaaggccaagggaaaaggcaaacgggagaacagctcaagtgaagaagaaagtgac
aatgatgttgaagttattaaggtgtggaattcaagatctcgaggcggcaaaggaaaagat
ctgaatgatgaagaggcctcaaacagccctgtagttcctaaagctgaagaaacaaaagca
acatcctcttccacacctggaagcccagcagctgactggtacaaggattttgttactgaa
gcagattcatctatcatggagcattctggaaaaataatgcttttgtttgagattttgcgc
atggctgaggtgttgggtgacaaagttttagttttcagccagtctctcatatctctggat
ttgatagaagattttctggaattggcaagtacagagaaaaatgaagaaaatgcatctgaa
aagccagtattttacaaaggggatgggaagtggtttagaaatatcgattactatcgttta
gacggccaaacctcccctcaaacacgtaaaaagtgggcagaggagttcaatgattcgacc
aatataaggggccgtctgttccttatttctacaaaagctggatccctgggtattaatctt
gttgctgctaatcgtgtgataatctttgatgcatcatggaatccatcctatgatatccag
agtatcttcagggtgtatcgatttggacagataaagcctgtatttgtctacaggttttta
gcccagggcaccatggaagaaaagatatatgacaggcagatcgccaaacagtccctgtcc
tttagagttattgatcaacaacaaatagaacgtcactttacaatgaatgaactgactgaa
ctttacacctttgagcctgatctgctggatgaccctaattccgaaaagaagaaaaagcga
gagactcccatgctgcctaaggatactgtgctagcagagctcttacaaatcttgaaggag
tacatagtcacttatcatgagcacgactctcttctggatcataaggaggaagaggccctt
acagaagaggatcggaaggcagcatgggcagaatatgaagctgaaaagaagggtttgacc
aatcgttttaacgtggcagcagtaactggggccaactacgctcaagtcaatataaactcg
caatcttcatacatgcctttaaacttgggagcgctgtcttctttatccaatcagcaactc
gaggatttaataaatcaaggcagagaaaaagtggttgaagctacaaataacatagcaact
gcaaggattcaaccccttgaagacattatctcgacagtgtggaaggaaaatccgactgcc
acggaggcccaagttcagtcccttgccctaagcaggcagtcgagccaagaattggaaata
aagagacgtgaggccatttataacgacgtactgactaagcaacagatgttgatcagctgc
gtgcagcgaattctcatgagtcgaaggttacagcaccaatacaaccagcaacagcagcag
caacaaattgtttttcaacagcaagcagctctgaatcgcctgatgatgcagaaaaatcca
aatattataatatccccttctaacttttctcaaattgacatgagaggaatgtaccaagct
gggatgcaaggtcatcagatgcagcgtaatgcacccgcctctataagagcaaaaaatcca
ggaccttcccagggaaaaaaaatgtga
DBGET
integrated database retrieval system
