Xenopus tropicalis (tropical clawed frog): 100380089
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Entry
100380089 CDS
T01011
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xtr03016
]
100380089 (trub1)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
100380089 (trub1)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
100380089 (trub1)
Prokaryotic type
100380089 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
100380089
NCBI-ProteinID:
XP_002941103
Xenbase:
XB-GENE-1008962
UniProt:
A0A803J5Q4
LinkDB
All DBs
Position
7:4234149..4245083
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AA seq
275 aa
AA seq
DB search
MAGDSAVRLLALSGLFPVYKPKGPTSAQVVAQLKGSLLKEAGLKEYVKKRKQTLKIGHGG
TLDSSASGVLVIGIGDGTKMLSTMLAGSKKYTTVGELGKATDTLDASGTVTEEKPYDHIT
KEDLEGALKLFTGNIMQVPPLFSALKRDGKRLSCLLRDGAEVEAKPARPVTVYQLSLRDF
QPPVFTLDVECGGGFYVRSLVNDLGKALKSCASVKELVRTKQGPFTLEDHTLKEEDWNIS
RIAQALQEYGPLLPAEPGNKRLKKENADNTVGSGE
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggattcggctgtcagactgttagcgctgagcgggctgttcccggtgtataag
cccaagggccccacctcagcgcaagtagtggcgcaactaaagggctccttactgaaagaa
gccgggctgaaggaatatgtgaagaaaaggaaacagaccctgaagattggccacgggggg
accctggatagttccgcctcaggggtgcttgtaattggcatcggggatggcaccaagatg
ctgagcacaatgcttgcagggtccaagaaatacacaacggtgggtgagctggggaaggcc
acagacacgctggatgcatcaggcacagtaacagaagaaaaaccttatgaccacatcact
aaggaagacttggagggggcgctgaagttatttacaggaaacatcatgcaggtcccccct
ctcttctcagcactgaaaagggacggaaaaagactttcctgcctgctgcgagacggcgcc
gaggtggaggcaaagccggccaggcctgtgactgtctatcagctgtctctgagagacttc
cagcccccagtttttactcttgatgttgagtgcggaggtgggttttatgtaagaagcctg
gtcaatgatttgggaaaagcactgaagagctgtgcgagtgtgaaggaacttgtccgtacc
aagcagggtccctttaccctggaggatcacaccctgaaagaagaagactggaacatcagt
cggatagcgcaggcactgcaggaatacggtcccctccttccagcagagccgggcaacaag
cggttaaagaaggaaaatgcagataatacagtcggatctggggaatga
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