Xenopus tropicalis (tropical clawed frog): 100380095
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Entry
100380095 CDS
T01011
Symbol
vps54
Name
(RefSeq) vacuolar protein sorting-associated protein 54
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
100380095 (vps54)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100380095 (vps54)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100380095 (vps54)
Membrane trafficking [BR:
xtr04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
100380095 (vps54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
SBP_bac_6
Motif
Other DBs
NCBI-GeneID:
100380095
NCBI-ProteinID:
XP_002939365
Xenbase:
XB-GENE-1013521
UniProt:
F6PUG2
LinkDB
All DBs
Position
5:32603458..32655574
Genome browser
AA seq
981 aa
AA seq
DB search
MYAMASSHSSSLVPHSNSNKAFYKKGLQPAQQVGMVRSLPDVCPKEPTGDTKSLRDEPSV
VADQHKWTIYNSKVNLPAALNDPRLAKRESDFFTKTWGQDFVESEVLPSPYLPAITKEQF
LSYSQQTISREKNHEKCKSVCPLKVDFDRPAYSHVLKSRADLEQVPKIFMKPDFALEDSL
TFNAVLPWSHFSSAGGKGSRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTS
QHELQDYLRKTSQAVKMLRDKISQIDRVMCEGSLRILRQALTRNNCIKIYNKLKLMATVH
QTQPTVQLLLSTSEYVGALDLIATTQEVLQQELQGIHSFRHLSSQLCEMEKLIDKMIISE
FTSYARSDLNRPLEEDSHVVEEERLVSLVFGMLKQRKLDFFEIYSDEMMATAKNIIKQCV
VNTVSQIEEIDSEVVTKLTDQIRMMNFSQWFGLLQNIFSKFTIFIERVKATLSVIRNVVL
MVLDKNQRVREMEMLAAQQNLRRESNVDNELAYLTHEGLFISDAFGEGELPNAATSTNFQ
RNTSPSSSEPSGSDTVSDPECTTDSSSSKEHTLPSVTQGGIEIILTEEMKLTDLELGKIA
NSIQELLYDASDICHDRCVKFLLARAKEGFLEKLNSAEFVSLSRAVEAFVLGTEKICGRR
SMSLRGALQSQANKFVNRFHDERKTKLSLLLDNERWKQADVPAEFQDLVDSIKDGKIVLP
ERKSGGTEERKPTDFLTVDGQKYAVVGTVLLLIRIILEYCSCVDDIPSVTTDMLTRLSDL
LKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPLIRAHFEARMQPKQ
YSMLRHFDHITKDYNDHIAEISAKLVTIMDGLFEKLLSKYEVKAPVPSTCFRTICKQMAK
MHEAIYDLLPEEQTQTLFLKINSSYIFHLRRQLCHLNVINDGGPQYGLVAADIAFYTENV
QALKGLKDLDLSLAEIWEQKR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcaatggcctccagccacagctcttcactagtgcctcactcgaacagcaacaaa
gctttttacaaaaagggtcttcagcctgctcagcaagtgggaatggtgcgatcactgcct
gatgtctgccccaaggagcctacaggtgatactaagagtttgcgtgatgaaccatctgta
gttgcagatcagcacaaatggacaatttataattctaaagtaaaccttccggcagcatta
aatgacccccgccttgcaaaacgggaatcagactttttcacaaaaacatgggggcaagac
tttgtggaaagtgaagtcctaccatcaccctacctcccagcaattactaaggaacagttt
ctatcatattcgcagcaaaccatcagtagagaaaaaaatcatgaaaaatgtaagagtgtt
tgcccactaaaggtggactttgacagaccagcctattctcatgttctcaaatcgagagca
gatctggaacaagtacctaagatctttatgaagccagactttgccttggaggactcctta
acatttaatgctgttttgccatggtctcattttagcagtgccggagggaaaggaagcaga
gatgcagcatcctcgaaattacttcaagaaaagctaagccactatttggatattgttgag
gttaacatcgctcaccaaatctccttgcgctctgaagcatttttccatgctatgacctct
caacatgagctgcaggactacctcaggaagacttcccaggctgttaaaatgctgcgagac
aagatctctcagatagacagagtcatgtgtgagggatctctgcggatcttacggcaagca
ctgaccaggaacaactgcattaaaatatacaataagctcaagttaatggcaacagtgcat
caaactcagcctactgtacagcttctattatcaacctctgagtatgtaggagctttggac
ttaatagcaacgacacaagaggtcttgcagcaggagttacagggtattcacagttttcga
catctcagctcacaactttgcgaaatggaaaaactcattgataaaatgatcatctctgaa
tttacttcgtatgctcgcagcgatttaaacagacctttagaagaagacagtcatgtagtg
gaagaggaaagactggtctctctcgtatttgggatgttaaagcagcgaaaactggatttc
tttgagatttactcagacgaaatgatggcaacagcaaaaaatatcatcaagcagtgtgtg
gttaacactgtgtctcagattgaggaaatagactcagaagttgttacaaagcttactgat
cagattcggatgatgaatttttctcagtggtttggcttgcttcagaatattttttctaag
tttacaatttttattgagagagttaaggcaacgctaagcgtcatccgtaatgtagtgctc
atggttttagacaaaaatcagcgggtgagggaaatggaaatgttggcagctcaacagaat
ctcagaagagaaagcaatgtggacaatgaattggcgtacttgactcatgaaggcttattt
ataagtgatgctttcggtgaaggtgagcttcccaatgctgctaccagcactaactttcaa
aggaacacatcacccagcagtagcgagccctctggcagcgatacagtatctgatcctgag
tgtaccacagactcttcttccagcaaagaacacacactgccttctgttacccaaggggga
atagaaataattctaactgaagaaatgaagttaactgacctggaacttggtaaaattgcc
aacagtatacaggagttactgtatgatgcctctgacatctgccatgaccgctgcgtcaag
ttcctgctagcgagggccaaggaagggtttcttgagaagctaaactctgctgaatttgtg
tccctctcacgggcagtggaagcattcgttttgggtactgaaaagatctgtggccgaagg
agcatgtcactgagaggggcactgcaaagccaagccaacaaatttgtaaatcggttccat
gatgaaagaaaaaccaaactgagcctcctgcttgataatgaacgctggaaacaagctgat
gtccctgctgaatttcaggacttagtagattctataaaggacggtaaaatagtgcttcct
gagcgaaaatctggaggtacagaagaaaggaaacccacagattttcttacagtggacgga
cagaagtatgcagttgttggcacagtgctacttttgatcagaatcattctcgagtactgc
agctgcgtagatgatatcccctctgtaactacagacatgttgactcggctgtctgatctt
ttaaagtattttaattcacggagttgccaattggttctgggagcaggagcattgcaagtg
gttggcctgaagacaataaccaccaagaacttagccttgtcttcgcggtgcttgcagctt
atagtacactacattcccctcataagggcccactttgaagctcggatgcagcctaagcag
tatagcatgctccggcattttgaccatataaccaaggactacaatgaccacattgcagag
atttctgccaagcttgtcacaataatggatggcctgtttgaaaagctactttccaagtat
gaggtaaaagccccagttccttctacgtgtttcagaaccatctgcaagcaaatggccaag
atgcacgaggccatttatgacctccttcctgaagagcaaacgcagactctgtttcttaaa
ataaattcaagctacatattccatttgaggcgacaattgtgtcatttaaatgtcattaat
gatggaggaccacaatacggattggtggcagctgacattgccttttacactgagaacgta
caagccttgaaaggcctgaaagatctggatcttagcttggctgaaatttgggagcagaaa
aggtga
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