Xenopus tropicalis (tropical clawed frog): 100380187
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Entry
100380187 CDS
T01011
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100380187 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
100380187 (prpf8)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100380187 (prpf8)
Complex C
U5 SnRNP specific factors
100380187 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
100380187
NCBI-ProteinID:
XP_002936105
Xenbase:
XB-GENE-966799
UniProt:
F6ZIA0
LinkDB
All DBs
Position
2:45520770..45540892
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRPQAPPMPGPPGGTPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVTDWFYDHQPLRDNRKYVNGTTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEYVEPFLKDTPLYSDNTANGIALLWAPRPFNLRSGRTRR
AIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWDTTEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDVATE
SAHPIRLFCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTVTEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWVHTQPNESPQLSPQDVTTHAKVMADNPAWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQASWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggggtgtttccatatagaccacaggcaccgccaatgcccggccccccaggtgga
acaccggactacatgtctgaagagaagctgcaggaaaaagcacgaaaatggcagcagcta
caggcaaaacgctattcagagaaaagaaaatttgggtttgtggatgcacagaaagaagat
atgcctccagaacatgttcgcaaaattattcgtgatcatggagacatgaccaacagaaag
ttccgacatgataagagagtttaccttggagcattgaagtatatgccacatgctgtctta
aagttacttgaaaacatgcccatgccttgggagcagatccgtgatgtccctgtgctgtat
catataacaggagccatctcatttgttaatgagattccatgggtcattgagcctgtctac
atagcacagtgggggtcaatgtggattatgatgaggcgagaaaaaagagacagacggcac
ttcaagaggatgaggtttcctccatttgatgatgaggagcctccactggattatgctgac
aatatccttgatgttgaacccctggaagccattcagcttgaactggacccagaggaagat
gctccagtcactgactggttctatgatcaccagcccttaagagacaacagaaagtatgtg
aatggtactacttatcagcggtggcagtttacacttccgatgatgtctacattatatcga
ttggctaatcagcttctgactgacctggttgatgataactacttctacctgtttgaccta
aaggcattctttacctccaaagcattaaacatggctattcctggagggccaaaatttgag
cctcttgttcgtgacattaacctgcaggatgaagattggaatgagtttaatgatattaac
aagataattatccgacagccaattcgaacagaatacaagattgcttttccttacctgtac
aacaatcttcctcaccatgtacatttaacctggtatcacacaccaaatgtggtttttatc
aaaactgaggatcctgatttaccagcattctattttgacccactgattaatcccatatca
cacaggcattctgtaaagagccaagagccattgccagatgatgatgaggaatttgaattg
ccagaatatgttgaaccattccttaaagacactcctctgtattcagataacaccgctaat
ggaattgctttactttgggctcctcgtcctttcaacttgcgttctggtaggaccaggagg
gctattgatattcctcttgtgaaaaactggtacagagagcattgtcctgctggccagcca
gtaaaagtcagagtatcttaccagaaattgctgaagtactatgtgctaaatgctttgaaa
cacaggcctccaaaagctcagaagaaaaggtatctcttccgttcatttaaagccacaaaa
ttctttcagtcgacaaagttggactgggtggaagtaggcctgcaggtttgccgccaaggc
tataacatgctgaacttgctgattcacagaaagaaccttaactatcttcatctggattac
aatttcaatttgaagccagtaaaaacgctgaccacaaaggaacgcaaaaagtctcggttc
ggcaatgccttccatctttgccgcgaggtcctgcgtctaaccaaactagttgtggacagc
catgtgcaatacagactggggaatgttgatgctttccagttggcagacggattacagtat
atttttgcccatgtggggcagctgactggaatgtaccgttacaagtacaaactaatgaga
caaattcgcatgtgcaaggacctgaagcatctgatctactacaggttcaatacaggtcca
gttggaaaggggcctggctgtggattttgggcagcaggctggagagtctggctctttttt
atgcgtggtatcacacctttgctggaaaggtggcttggaaatctgcttgctagacaattt
gaaggtcgccattccaaaggagttgcgaaaactgtgacaaaacagcgagtggagtctcac
tttgacttggagctcagagctgctgttatgcatgacatattggacatgatgccagaggga
atcaagcagaacaaagccagaaccatcttgcagcacttgagtgaagcttggagatgctgg
aaagctaacattccctggaaggtaccaggtcttccaacacccattgaaaacatgattctg
cgatatgtaaaggccaaagcggactggtggacaaatactgcgcattacaacagagaacgt
attagacgtggtgccactgtcgacaaaactgtgtgtaagaagaatctgggccgtctgact
cgtttgtacttgaaagcagaacaagagagacagcacaactacctgaaggatgggccttac
attactgcagaggaggcagttgctgtgtacactaccactgtccactggctagagagtagg
aggttttctccaattccttttcctcctctttcctacaaacatgatacaaaactactcatt
ctagcacttgagagactgaaagaagcatacagtgtgaagtcgcgtttgaatcagtctcag
agggaagaattgggtttaatcgaacaggcgtatgacaaccctcacgaagctctgtccaga
atcaagcgtcacttgctcacccaaagagctttcaaggaggttggaatagagtttatggat
ctctacagccaccttgttcctgtttatgacgtggaaccactggaaaaaattactgatgcc
tacctggatcagtacctgtggtatgaagcagataaaagaaggcttttccctccatggatc
aagcctgcagatacagagccacctcccttgttggtctacaagtggtgccaaggcataaat
aacctgcaggatgtttgggacaccacagaaggtgaatgcaatgtgatgctggagtcacgc
tttgaaaagatgtatgaaaagattgacttgactctgctgaatcgtctgctgcgtctaatt
gttgatcacaatattgctgattacatgactgcaaaaaacaacgttgtgataaattacaag
gatatgaaccacacaaattcctatggcattattcgtggtctccagtttgcttcgtttatt
gtccagtactatggtctggtgatggatcttctggttcttggtttacacagagctagtgaa
atggctgggccaccacaaatgccaaatgactttctaagtttccaagatgtggcaacagaa
tcggcccatcctatccgcctgttttgtcgatacattgaccgcattcacatttttttcaga
ttttcagctgatgaagccagagaccttattcagagatatttaacagaacatccagatccc
aataatgagaatattgtgggctacaacaataaaaagtgttggccaagggatgccagaatg
cgcctcatgaaacatgatgtaaatctgggccgtgcagtgttttgggatataaaaaataga
ctgcctcgttctgtcaccactgtgcagtgggagaacagttttgtgtctgtgtacagtaaa
gacaatccaaacctgctgtttaatatgtgcggctttgaatgccgcatacttcccaaatgc
cgcacaagctatgaagagtttacgcacaaggatggtgtctggaacctgcaaaatgaagtg
accaaagaacgcacagctcagtgcttcttaagagttgatgacgagtccatgcagagattt
cacaacagagtccgtcaaattcttatggcttccgggtccacaacctttacaaaaattgtg
aacaagtggaatacagcacttattggcctaatgacttatttccgtgaggctgtggtcaac
acccaagaactacttgatctgctggtgaaatgtgagaacaaaatccaaacaagaataaag
attgggctgaactctaaaatgccaagcaggttcccgcctgttgttttttacacaccaaag
gaacttggaggtttgggcatgttgtccatgggacatgttttaattccacagtctgaccta
aggtggtctaagcagacagatgttggcataacccatttccgttctggcatgagtcacgag
gaggatcaactgattcctaatctgtatcgttacattcagccttgggaaagtgagtttata
gactctcagagagtctgggctgagtatgccttaaagaggcaggaggcgattgctcaaaac
agacgcctgacgcttgaagacttagaagactcatgggacaggggaattccacgtattaat
acactgtttcagaaagatcggcacacacttgcttatgacaagggttggagagttcgcaca
gactttaaacagtaccaggtgctgaaacaaaacccgttctggtggacacatcagcgtcat
gatggaaagctatggaatctgaacaactaccgcacagatatgattcaggcccttggaggg
gtggagggtatactggagcacacgctatttaaaggcacttactttcccacatgggagggt
cttttctgggaaaaggccagcggctttgaagaatcaatgaaatggaagaaactgaccaat
gctcagcgttctggtttaaaccagataccaaacagaagatttacactttggtggtctccc
acaatcaacagagccaacgtctatgttggattccaggtgcaactggatttgactgggatt
ttcatgcatggcaagattcctacattaaaaatctcattgattcagatattcagggcccac
ttgtggcaaaagattcatgaaagcattgtcatggatttatgtcaggtgtttgatcaggag
ctggatgctttggagattgagactgtgcagaaagagaccatccaccctaggaagtcctat
aagatgaactcgtcctgtgctgatattctgctctttgcctcctacaaatggaatgtgtct
cgtccctccttgcttgctgactcaaaggatgtaatggacagcacaaccacccagaagtac
tggattgatatacagctgagatggggtgactatgactcccacgacattgaaagatatgca
cgtgccaaatttttggattatacaacagataacatgagtatctatccctcacctactggt
gttcttattgccattgaccttgcctataacctgcacagtgcatatggaaactggttccca
gggggaaagcctctaatacagcaagcaatggcaaagataatgaaggcaaaccctgccctc
tacgtgctgcgggagcgcatccgtaaaggattacagctttactcttctgagcccactgag
ccttacctgtcttctcagaactatggggaactcttctccaatcaaatcatctggtttgtg
gatgacacaaatgtatacagagtcaccatccacaagacctttgaaggtaacctgacaacc
aagccaatcaatggagccattttcatctttaatcccaggactggccagctcttcttaaaa
attattcatacttctgtgtgggctggacagaagagattgggtcagctggccaaatggaaa
actgcagaagaagtagctgcattgattcgatctcttccagttgaggagcagccgaaacaa
atcattgtcaccaggaaaggcatgttggatccactcgaggtgcacttgcttgacttccca
aacattgtcatcaaaggatcagaattacagttgcctttccaggcctgtctgaaggtggag
aaatttggtgatctgatcttaaaggctacagagcctcagatggttctgttcaatctatat
gatgactggctgaagacgatctcttcatacacggcattctctcgattaattttaattcta
agagccttacatgtcaacaatgaccgtgcaaaagtgatcttgaaacctgacaagaccact
gtcacagagccccatcatatctggcccacactgacagatgaggaatggattaaggttgaa
gttcagctaaaggatttgattttagcagattatggaaagaagaacaacgtaaatgtggcc
tcactgacacagtctgaaatcagagacatcattctgggtatggaaatttctgctccatcc
cagcaaaggcagcagattgcagaaattgaaaagcaaacaaaagaacagtctcagctcact
gctactcagacgcgcactgtcaacaaacacggagatgagattatcacatctaccaccagc
aactacgaaacacagacgttctcttcaaagactgagtggcgagtcagagcaatatctgct
gccaaccttcacctccgaaccaatcacatctatgtatcgtctgatgacattaaggaaact
ggatacacctacatattgcccaaaaatgtgcttaagaaattcatttgcatctctgatctt
agagcacagattgctggttacctgtatggtgtgagccccccagataatccccaagtgaag
gaaatccgttgcattgttatggtgccccagtggggaactcatcaaactgtccacctgcca
agccagctgccccaacatgaataccttaaggaaatggagccattaggatgggttcacact
cagccaaatgagtccccacagttgtcacctcaagatgtcaccacccatgccaaagtaatg
gctgacaatcctgcctgggatggagagaaaaccataatcattacttgcagctttactcca
ggttcatgcacgttaaccgcttataaactgactcccagtggttatgaatggggacggcaa
aacacagataaaggaaacaatcccaagggctacttgccatcgcattatgagagggtccag
atgctgctgtctgatcgcttccttgggttcttcatggtgccagcacaagcgtcctggaac
tacaacttcatgggtgtgagacatgacccaaacatgaaatatgagttacagctggccaac
ccgaaggagttttaccatgaagtacaccggccatcgcatttcctaaactttgctctgctg
caggagggtgaggtgtattcggctgaccgggaagatctgtatgcataa
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integrated database retrieval system
