Xenopus tropicalis (tropical clawed frog): 100380205
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Entry
100380205 CDS
T01011
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03020
RNA polymerase
xtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100380205 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
100380205 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100380205 (polr2b)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100380205 (polr2b)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100380205 (polr2b)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100380205 (polr2b)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100380205 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
100380205
NCBI-ProteinID:
XP_002937598
Xenbase:
XB-GENE-1012874
UniProt:
F6QHD9
LinkDB
All DBs
Position
1:92026313..92093743
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatgctgatgaagatatgcagtatgatgaagatgatgatgaaatcactccagac
ctgtggcaggaggcatgttggattgttattagctcgtattttgatgaaaagggcttggta
cggcagcagcttgattcctttgatgagttcatacagatgtctgtacagagaattgtagaa
gatgccccacctatagatcttcaagctgaagctcaacatacaacaggagaagtagaagag
cctcctaggtacctgttaaaatttgaacagatttacttatctaaacctacacactgggaa
agagatggcgctccctcgccaatgatgccaaatgaagcaaggttaagaaatctaacgtat
tctgcccctctttatgtggacataactaagacagtggtgaaagaaggagaggaacaaatt
caaacacaacatcagaaaactttcataggcaaaataccgatcatgttacgctcaacatac
tgtttgttaaatggcttgactgaccgtgatctttgtgagttaaatgaatgcccacttgat
ccaggaggctattttattataaatggatctgaaaaggttcttattgctcaggaaaagatg
gctacaaacacagtatatgtgtttgcaaagaaggattcaaagtatgcttacactgcagag
tgtaggtcctgtctggaaaattcatcaagaccaaccagctctatatgggttagcatgctt
gctagaggaggtcagggtgccaaaaaaagtgctataggtcagcgcattgttgcaacccta
ccttatatcaagcaggaagttcccatcattattgtcttccgtgctttaggatttgtgtct
gacagggacatattagaacatattatttatgactttgaagatccagagatgatggaaatg
gtcaaaccatcgcttgacgaagcttttgttattcaggaacaaaacgtggctcttaatttt
attggttctagaggtgctaagcctggtgttacaaaagaaaaaaggatcaaatatgcaaaa
gaagtcctacagaaggaaatgcttccacatgttggtgtcagtgatttctgtgaaacaaaa
aaagcttactttctaggatacatggttcacaggctacttctggcggctttgggaagaaga
gaacttgatgacagagatcattatggtaacaaaagattggatctggctgggccattactg
gcttttctttttcgagggatgttcaagaatttgctaaaagaagttcgaatttatgcacaa
aaatttattgatcgaggaaaagattttaatctggaactagcaatcaaaaccaggataatt
tctgatggattgaagtattctttagccactggaaattggggtgaccaaaagaaagcacat
caagcaagagctggtgtgtcccaggtgttaaatcggctaacctttgcatcaactctttct
catctccggagattaaattcccctattgggagggatgggaaacttgcaaaaccacgacaa
ttgcacaacactctgtggggaatggtttgtcctgctgagaccccagagggccatgctgta
ggacttgttaagaatttggcgttgatggcctacatttccgttggttctcagccgtcacct
atactagagttcttagaagaatggagtatggaaaacctagaagaaatttctccagcagcc
attgcagatgccaccaaaatatttgttaacggttgctgggttggaattcacaaagatcca
gaacagctgatgaacactcttcggaagctacgccgccaaatggatattattgtttctgag
gtgtcaatgattagagatatcagagaaagagaaattcgtatttatactgatgctggccga
atttgcaggcctctgttaattgtggaaaagcaaaaactgcttctaaaacggagacacatt
gatcagctcaaagagagagaatacaataattacagttggcaggatcttgtagctagtggt
gttgtggaatatattgacacgctagaggaagagactgttatgcttgctatgacaccagat
gatttgcaggaaaagggagtggcttattgttcaacttacacacactgcgaaattcatccc
tcaatgatcctaggtgtctgtgcttctattattcccttccctgatcataaccagtctcct
agaaacacatatcagtctgccatgggcaaacaagcaatgggtgtctatattacaaatttt
catgttcgtatggatactttggcacatgttttatattaccctcagaaacctctggtaact
acaaggtccatggagtacctaagattcagggagcttccagctggtatcaactccattgta
gctattgcctcttatactggatacaatcaagaggattctgttattatgaatcgctctgct
gttgacagaggatttttcaggtctgtgttctaccgttcatacaaagaacaagagtccaaa
aagggatttgaccaggaagaagtttttgagaaaccaactcgtgaaacgtgtcaggggatg
aggcatgctatttatgataaattggatgatgatggcttgatagcacctggtgtacgtgtg
tcaggggatgacgtaattattggcaagacagtaactctgcctgaaaatgaagacgagtta
gaaagtactaatcgccgttacacgaagagagactgtagcactttcctacgtactagtgaa
actggaattgttgatcaggtcatggtgacacttaatcaagagggatacaagttttgtaaa
attagggtgcgttcagttcggattcctcaaattggagataagtttgctagccgtcatggg
cagaaaggtacctgtggtattcagtacaggcaagaggacatgccttttacttgtgaagga
attacacctgatattatcatcaaccctcatgcaatcccttctcgtatgacagttggacat
ttgattgaatgtctgcaggggaaggtatctgcaaacaaaggggaaataggtgatgcaaca
ccctttaatgatgctgtaaatgtgcaaaaaatttcaaatctgttatcggattatggatat
catcttcgaggaaatgaggttctgtacaatggattcactggacgtaaaattacatcccag
atcttcattgggccaacctattaccagagattaaagcacatggtggatgataaaattcat
tcccgtgctagaggtcctattcagattttgaatagacaacccatggaaggcagatcccgg
gatggaggtctacgttttggagaaatggaacgtgattgtcagattgcccatggagctgct
cagttcttaagagagaggttgtttgaagcttctgatccttatcaagttcatgtctgcaat
ctctgtggcttgatggcaattgccaatacaagaacccatacatatgaatgtaggggatgt
cggaacaaaacacagatatctttggtgcgaatgccctatgcctgcaaacttctgtttcaa
gaattaatgtcaatgagtattgctccacgcatgatgacctcataa
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