Xenopus tropicalis (tropical clawed frog): 100485133
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Entry
100485133 CDS
T01011
Symbol
emg1
Name
(RefSeq) ribosomal RNA small subunit methyltransferase NEP1
KO
K14568
rRNA small subunit pseudouridine methyltransferase Nep1 [EC:
2.1.1.260
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100485133 (emg1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
100485133 (emg1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.260 rRNA small subunit pseudouridine methyltransferase Nep1
100485133 (emg1)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
90S particles
Other 90S particles
100485133 (emg1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EMG1
TetR_C_43
Motif
Other DBs
NCBI-GeneID:
100485133
NCBI-ProteinID:
XP_002941256
Xenbase:
XB-GENE-958956
UniProt:
F7E938
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All DBs
Position
7:complement(9354375..9359037)
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AA seq
234 aa
AA seq
DB search
MAASRKSTLDKSTEGFEEQTGGPKAKRRREKRLIVLLEGACLETVRVGKTYELLNCDQHK
SLLIKNGRDPGQVRPDITHQSLLMLLDSPLNRAGLLQVYIHTHRNVLIEVNPQTRIPRTF
PRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPLTDHLPVGCVKMAMSFSGESVPCVRDLV
PSNEPVLFVVGAFAHGSVNVDFTERCVSISQYPLSAALTCAKLCTAFEEVWGVQ
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccagaaagtccacgcttgacaaatccacggaggggtttgaggaacagacg
ggggggccgaaagcaaagaggcggcgagagaagagactgatagtcctgctggagggagcg
tgtctggagactgtgcgggtgggaaagacgtatgaacttctcaactgtgatcagcacaaa
tccctcctgataaagaatgggagggacccgggccaggtccgaccggacattacacaccag
agtttgctgatgctcctcgacagtcctttgaaccgggccggattgctgcaggtttatatc
cacacccacaggaatgtcctgatagaggttaatccccagacgcggataccccgaaccttc
cccaggttctgtggcctgatggttcagctgctgcacaagttaagtgtccgagctgctgac
ggcccccagaaacttctcaaggttattaagaaccccctgacggatcacctgcctgtaggc
tgtgttaagatggctatgtccttctcgggagagagcgtcccctgtgtgagagacttggtc
ccttccaatgagccggtcctgtttgtggtgggagcttttgctcatggatcggtcaatgtg
gatttcacagaacgctgcgtttccatcagtcagtacccactctctgctgccctcacctgc
gccaagctgtgtactgcatttgaggaggtttggggggttcagtga
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