Xenopus tropicalis (tropical clawed frog): 100485143
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Entry
100485143 CDS
T01011
Symbol
atg16l2
Name
(RefSeq) autophagy-related protein 16-2 isoform X1
KO
K20868
autophagy-related protein 16-2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100485143 (atg16l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100485143 (atg16l2)
03029 Mitochondrial biogenesis [BR:
xtr03029
]
100485143 (atg16l2)
Membrane trafficking [BR:
xtr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
100485143 (atg16l2)
Others
Specific organelles associated proteins
Auto phagosome
100485143 (atg16l2)
Mitochondrial biogenesis [BR:
xtr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
100485143 (atg16l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ATG16
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Phage_GP20
Motif
Other DBs
NCBI-GeneID:
100485143
NCBI-ProteinID:
XP_004919969
Xenbase:
XB-GENE-6047387
UniProt:
A0A6I8SNN7
LinkDB
All DBs
Position
2:175664925..175691505
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AA seq
594 aa
AA seq
DB search
MQEGRRARGTGAGWKRHIIRQLKHRDRTQNARFHDVIHSYNKLLEKSTLLKQLTETIQTE
PGSRFHDEAPGPPGVPETDGQQKEMEELDTYNGKLAFEACEMRARIQAQEDVMRIQNTRM
ADLSHTLESQINQKNQLLDDLAWIVATNADLKEDYDHVHRQKQGLEAEYQSKVVALLAIT
DDIMKRKAADAENQNELNDRRKEELWRRHCKKALRKCVSSDAGLEHTQTAGGTETSGSAE
GEATVKKTRSQSMISLGTSRFMGTIRNVLGFSFRKGKVDLPREEPWHCSPNVCVLCCVPT
KALCNKEVHESEVHAVQFSPNSRTVATGGADRVIKIWNVNHGMLQVCRTLEGSGGGITSI
EFDPSGLQILASSFDGAAHLWKLDGKAYESLTGHTGKVTAAKFKMSLYRAVTCSLDRTIR
EWDLQKAACIRRISVSSYCSDVVCSDYYMISGHHDKKIRFWDSRSESCFREVTLEEKITS
LFMDQEQGQLLSCSRDDALSLFDLRSSNVRQVFRADGFKCGCDWTKAILSPDGSYTLAGS
ADGTIFIWNTRTGLLERSLNGQHRASVNAVTWSMSGDYVVSVDRGKMAVVWSDY
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagggcaggagagcccgggggaccggggcagggtggaagcgccacatcattcgg
cagctgaagcatcgggacaggacccagaatgcccggttccacgatgtcatccattcctat
aacaaactgctggagaagtcgactttactgaagcagctgacggagaccatacagaccgag
ccgggcagcaggttccatgatgaggcgcctgggcctccgggggtaccagagactgacggg
cagcagaaagaaatggaagagctggacacctataatggaaaattggcatttgaagcctgt
gagatgagagcaagaattcaagcccaagaggatgtaatgagaatccagaacactaggatg
gctgatctctcccatacgctggagtcgcagataaaccagaagaatcagttactggacgac
ctggcgtggatcgtggccaccaacgcggacctgaaagaggactacgaccacgtgcacagg
cagaagcaggggctggaggccgagtaccagagcaaagtagtggcgctcctggccattacc
gacgacatcatgaagaggaaggcggccgacgccgagaatcagaatgagttaaacgacagg
aggaaagaggagttgtggcggcgccattgtaagaaggcgctacggaaatgcgtgagcagc
gacgcaggcttggagcacacccagacagccggcggcacagagacttccggcagcgcagag
ggagaggctacagttaaaaaaacgaggtctcagtccatgatctccctgggcacctcccga
ttcatgggcaccataagaaatgttttaggtttcagtttccgcaaaggaaaggtggatttg
ccacgtgaggagccctggcactgttcccccaatgtctgtgtgctgtgctgtgtgcccacc
aaggccctgtgtaacaaggaagtccatgagtctgaagtccacgctgtgcagtttagcccc
aactccaggacggtggcgacagggggtgcagacagggtcataaagatctggaatgtaaat
cacggaatgttgcaggtctgtcggacactggagggcagcggtggtgggatcaccagtata
gaattcgacccctcgggccttcagattttggcctcctcgttcgacggcgccgcccacctc
tggaaattagacggtaaagcttatgagtctctcaccggccacacagggaaggtaactgct
gctaaattcaagatgtcgctgtaccgggctgtgacctgtagcctggaccggaccataagg
gaatgggatctccagaaagcagcctgtataaggagaatctctgtgtcctcctactgcagc
gatgtggtttgttctgattactacatgatcagtggccaccatgacaagaaaatccgattc
tgggacagcaggtccgagagctgctttcgggaggtgacgctggaggagaagatcacgtca
cttttcatggaccaagaacagggccaactgctgagctgctcccgggacgacgccctgagc
ctcttcgacttgcgctcgagtaacgtccggcaggtattcagagcggatgggttcaagtgc
ggatgtgattggacgaaagccatactgagccccgatgggagttacacgttggccggctcg
gcggatggcaccatcttcatctggaacacgcgcacggggttactggagcggagcctcaac
gggcagcacagggcgtctgtgaatgcagtgacctggtcaatgtccggagactacgtggtc
agtgtggaccgtggcaagatggctgtggtgtggagcgactattga
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